ncbp2 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000014898 T36077_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000020688 RRM 41 111

Links

Other RRM family RBPs
Other Danio rerio RBPs

121 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCBP2 Oryzias latipes ENSORLG00000011235 N 0.972
NCBP2 Takifugu rubripes ENSTRUG00000018355 N 0.930
NCBP2 Tetraodon nigroviridis ENSTNIG00000006065 N 0.930
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.887
ENSMGAG00000002257 Meleagris gallopavo ENSMGAG00000002257 N 0.873
ncbp2 Xenopus tropicalis ENSXETG00000019384 N 0.873
AAH72902 Xenopus laevis AAH72902 N 0.873
P52299 Xenopus laevis P52299 N 0.873
NCBP2_CHICK Gallus gallus ENSGALG00000005753 N 0.873
2118330B Xenopus laevis 2118330B N 0.859
CAA59259 Xenopus laevis CAA59259 N 0.859
NCBP2 Gasterosteus aculeatus ENSGACG00000006238 N 0.859
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.845
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.845
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.845
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.845
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.845
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.845
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.845
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.845
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.845
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.845
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.845
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.845
ENSACAG00000015128 Anolis carolinensis ENSACAG00000015128 N 0.845
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.845
ENSMGAG00000006728 Meleagris gallopavo ENSMGAG00000006728 N 0.845
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.845
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.845
NCBP2 Equus caballus ENSECAG00000016153 N 0.845
NCBP2 Homo sapiens ENSG00000114503 N 0.845
NCBP2 Gallus gallus ENSGALG00000006843 N 0.845
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.845
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.845
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.845
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.845
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.845
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.845
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.845
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.845
GJ23276 Drosophila virilis FBgn0210378 N 0.831
GI23717 Drosophila mojavensis FBgn0146442 N 0.831
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.831
GF16759 Drosophila ananassae FBgn0093780 N 0.831
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.831
GH15101 Drosophila grimshawi FBgn0122576 N 0.831
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.831
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.831
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.831
NCBP2 Taeniopygia guttata ENSTGUG00000008864 N 0.831
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.831
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.831
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.831
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.817
GG22670 Drosophila erecta FBgn0114835 N 0.817
NCBP2L Loxodonta africana ENSLAFG00000027581 N 0.817
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.817
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.817
GK11244 Drosophila willistoni FBgn0213255 N 0.817
NCBP2_ANOGA Anopheles gambiae AGAP002547 N 0.817
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.803
estExt_Genewise1.C_5160046 Capitella teleta estExt_Genewise1.C_5160046 N 0.803
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.803
GA11577-RA Drosophila pseudoobscura FBgn0071628 N 0.803
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.803
91084 Helobdella robusta 91084 N 0.803
GE25514 Drosophila yakuba FBgn0242580 N 0.803
estExt_fgenesh1_kg.C_1730002 Daphnia pulex estExt_fgenesh1_kg.C_1730002 N 0.803
GD19204 Drosophila simulans FBgn0190709 N 0.803
GM15280 Drosophila sechellia FBgn0170200 N 0.803
Cbp20 Drosophila melanogaster FBgn0022943 N 0.803
GL12592 Drosophila persimilis FBgn0150198 N 0.803
DGIL_AUG5s12516g4t1 Acyrtosiphon pisum DGIL_AUG5s12516g4t1 N 0.789
GJ18756 Drosophila virilis FBgn0205908 N 0.789
PHUM535920 Pediculus humanus PHUM535920 N 0.789
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.789
estExt_Genewise1.C_sca_180152 Lottia gigantea estExt_Genewise1.C_sca_180152 N 0.789
NCBP2L Sus scrofa ENSSSCG00000012562 N 0.775
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.775
NCBP2_CULQU Culex quinquefasciatus CPIJ003555 N 0.761
Ppa-ncbp-2 Pristionchus pacificus PPA17381 N 0.761
DGIL_AUG5s15103g4t1 Acyrtosiphon pisum DGIL_AUG5s15103g4t1 N 0.761
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.761
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.761
NCBP2L Equus caballus ENSECAG00000003478 N 0.761
LOAG_03270 Loa loa LOAG_03270 N 0.761
CpipJ_CPIJ003555 Culex pipiens CpipJ_CPIJ003555 N 0.761
XP_002160076.1 Hydra magnipapillata XP_002160076.1 N 0.761
Bm1_02935 Brugia malayi Bm1_02935 N 0.746
NCBP2L Canis familiaris ENSCAFG00000017990 N 0.746
XP_002166119.1 Hydra magnipapillata XP_002166119.1 N 0.746
estExt_gwp.C_920142 Nematostella vectensis estExt_gwp.C_920142 N 0.746
NCBP2 Sorex araneus ENSSARG00000014294 N 0.746
ENSCING00000003079 Ciona intestinalis ENSCING00000003079 N 0.732
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.732
ENSCING00000016926 Ciona intestinalis ENSCING00000016926 N 0.732
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.718
SNAPOd2T00014922001 Oikopleura dioica SNAPOd2T00014922001 N 0.718
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.718
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.718
Minc06129 Meloidogyne incognita Minc06129 N 0.718
XP_001187788.1 Strongylocentrotus purpuratus XP_001187788.1 N 0.718
XP_802051.1 Strongylocentrotus purpuratus XP_802051.1 N 0.718
Minc02990 Meloidogyne incognita Minc02990 N 0.718
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.704
ENSCSAVG00000005823 Ciona savignyi ENSCSAVG00000005823 N 0.704
NCBP2L Microcebus murinus ENSMICG00000016081 N 0.704
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.704
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.704
AFLA_046450 Aspergillus flavus CADAFLAG00005972 N 0.704
MCYG_04468 Microsporum canis MCYG_04468 N 0.704
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.704
TERG_03424 Trichophyton rubrum TERG_03424 N 0.704
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.704
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.704
FVEG_07036 Fusarium verticillioides FVEG_07036 N 0.704
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.704
CAOG_06930 Capsaspora owczarzaki CAOG_06930 N 0.704
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.704
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.704
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.704