estExt_fgenesh2_kg.C_50105 (Fragilariopsis cylindrus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh2_kg.C_50105 T50757_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_kg.C_50105 RRM 23 91

Links

Other RRM family RBPs
Other Fragilariopsis cylindrus RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.899
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.855
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.797
s_454910 Phytophthora sojae s_454910 N 0.783
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.783
PITG_10282 Phytophthora infestans PITG_10282 N 0.783
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.768
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.768
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.768
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.768
mgf016428m Mimulus guttatus mgf016428m N 0.768
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.754
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.754
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.754
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.754
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.754
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.739
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.739
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.739
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.739
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.739
SB01G003790 Sorghum bicolor Sb01g003790 N 0.739
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.739
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.739
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.739
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.739
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.739
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.739
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.739
29868.m000351 Ricinus communis 29868.m000351 N 0.739
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.739
PK21780.1 Cannabis sativa PK21780.1 N 0.739
ppa013407m Prunus persica ppa013407m N 0.739
MDP0000185506 Malus x domestica MDP0000185506 N 0.739
ppa013405m Prunus persica ppa013405m N 0.739
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.725
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.725
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.725
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.725
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.725
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.725
PHUM617060 Pediculus humanus PHUM617060 N 0.725
EDO06533.1 Babesia bovis EDO06533.1 N 0.725
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.710
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.710
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.710
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.710
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.710
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.710
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.710