THAPSDRAFT_20086 (Thalassiosira pseudonana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Thaps20086 T46249_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Thaps20086 RRM 10 78

Links

Other RRM family RBPs
Other Thalassiosira pseudonana RBPs

123 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh2_kg.C_50105 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_50105 N 0.899
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.841
s_454910 Phytophthora sojae s_454910 N 0.841
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.841
PITG_10282 Phytophthora infestans PITG_10282 N 0.841
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.826
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.826
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.812
mgf016428m Mimulus guttatus mgf016428m N 0.812
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.812
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.812
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.812
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.812
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.812
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.797
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.797
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.797
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.797
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.797
MDP0000185506 Malus x domestica MDP0000185506 N 0.797
SB01G003790 Sorghum bicolor Sb01g003790 N 0.797
ppa013405m Prunus persica ppa013405m N 0.797
ppa013407m Prunus persica ppa013407m N 0.797
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.797
29868.m000351 Ricinus communis 29868.m000351 N 0.797
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.797
PK21780.1 Cannabis sativa PK21780.1 N 0.797
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.797
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.797
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.783
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.783
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.783
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.783
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.783
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.768
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.768
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.768
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.768
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.768
PHUM617060 Pediculus humanus PHUM617060 N 0.768
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.768
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.768
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.754
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.754
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.754
AAEL005909 Aedes aegypti AAEL005909 N 0.754
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.754
AGAP002780 Anopheles gambiae AGAP002780 N 0.754
MDP0000916880 Malus x domestica MDP0000916880 N 0.754
TA13725 Theileria annulata TA13725 N 0.754
EDO06533.1 Babesia bovis EDO06533.1 N 0.754
GI13232 Drosophila mojavensis FBgn0135989 N 0.739
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.739
GH16287 Drosophila grimshawi FBgn0123758 N 0.739
GG14070 Drosophila erecta FBgn0106332 N 0.739
GL22529 Drosophila persimilis FBgn0160121 N 0.739
GD13137 Drosophila simulans FBgn0184859 N 0.739
GK17258 Drosophila willistoni FBgn0219257 N 0.739
ISCW024082 Ixodes scapularis ISCW024082 N 0.739
GJ12004 Drosophila virilis FBgn0199256 N 0.739
GF10910 Drosophila ananassae FBgn0087950 N 0.739
GM13852 Drosophila sechellia FBgn0168783 N 0.739
GE20495 Drosophila yakuba FBgn0068445 N 0.739
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.739
CG13298 Drosophila melanogaster FBgn0035692 N 0.739
LOAG_04189 Loa loa LOAG_04189 N 0.739
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.739
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.739
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.739
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.739
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.725
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.725
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.725
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.725
NCLIV_001260 Neospora caninum NCLIV_001260 N 0.725
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.725
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.725
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.725
PFL1200c Plasmodium falciparum PFL1200c N 0.725
PVX_123875 Plasmodium vivax PVX_123875 N 0.725
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.725
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.725
TGME49_105010 Toxoplasma gondii TGME49_105010 N 0.725
TGVEG_106330 Toxoplasma gondii TGVEG_106330 N 0.725
TGGT1_042490 Toxoplasma gondii TGGT1_042490 N 0.725
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.710
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.710
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.710
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.710
PY07239 Plasmodium yoelii PY07239 N 0.710
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.710
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.710
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.710
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.710
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.710
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.710
sf3b14 Danio rerio ENSDARG00000009753 N 0.710
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.710
LOC100056247 Equus caballus ENSECAG00000015618 N 0.710
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.710
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.710
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.710
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.710
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.710
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.710
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.710
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.710
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.710
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.710
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.710
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.710
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.710
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.710
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.710
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.710
TP02_0539 Theileria parva TP02_0539 N 0.710
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.710
SF3B14 Gallus gallus ENSGALG00000016501 N 0.710
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.710
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.710
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.710
AC008073.5 Homo sapiens ENSG00000115128 N 0.710
32497 Aureococcus anophagefferens 32497 N 0.707