fgeneshTA2_pm.C_scaffold_21000029 (Trichoplax adhaerens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgeneshTA2_pm.C_scaffold_21000029 T52543_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgeneshTA2_pm.C_scaffold_21000029 RRM 19 86

Links

Other RRM family RBPs
Other Trichoplax adhaerens RBPs

145 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.884
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.884
PHUM617060 Pediculus humanus PHUM617060 N 0.884
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.868
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.855
ISCW024082 Ixodes scapularis ISCW024082 N 0.855
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.855
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.855
AAEL005909 Aedes aegypti AAEL005909 N 0.841
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.841
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.841
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.841
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.841
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.841
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.841
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.841
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.838
GE20495 Drosophila yakuba FBgn0068445 N 0.838
LOAG_04189 Loa loa LOAG_04189 N 0.838
GF10910 Drosophila ananassae FBgn0087950 N 0.838
CG13298 Drosophila melanogaster FBgn0035692 N 0.838
PITG_10282 Phytophthora infestans PITG_10282 N 0.838
GL22529 Drosophila persimilis FBgn0160121 N 0.838
GM13852 Drosophila sechellia FBgn0168783 N 0.838
GJ12004 Drosophila virilis FBgn0199256 N 0.838
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.838
GK17258 Drosophila willistoni FBgn0219257 N 0.838
GG14070 Drosophila erecta FBgn0106332 N 0.838
GI13232 Drosophila mojavensis FBgn0135989 N 0.838
GD13137 Drosophila simulans FBgn0184859 N 0.838
s_454910 Phytophthora sojae s_454910 N 0.838
GH16287 Drosophila grimshawi FBgn0123758 N 0.838
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.826
AGAP002780 Anopheles gambiae AGAP002780 N 0.826
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.826
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.826
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.826
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.824
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.812
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.812
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.812
SF3B14 Gallus gallus ENSGALG00000016501 N 0.812
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.812
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.812
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.812
LOC100056247 Equus caballus ENSECAG00000015618 N 0.812
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.812
AC008073.5 Homo sapiens ENSG00000115128 N 0.812
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.812
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.812
68671 Helobdella robusta 68671 N 0.812
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.812
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.812
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.812
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.812
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.812
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.812
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.812
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.812
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.812
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.812
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.812
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.812
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.812
AAH57709 Xenopus laevis AAH57709 N 0.812
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.812
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.812
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.812
sf3b14 Danio rerio ENSDARG00000009753 N 0.812
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.812
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.812
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.812
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.812
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.812
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.809
mgf016428m Mimulus guttatus mgf016428m N 0.809
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.809
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.809
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.797
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.797
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.797
Minc01156 Meloidogyne incognita Minc01156 N 0.797
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.794
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.794
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.794
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.794
TA13725 Theileria annulata TA13725 N 0.783
Smp_032060 Schistosoma mansoni Smp_032060 N 0.783
PPA24922 Pristionchus pacificus PPA24922 N 0.783
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.783
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.783
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.783
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.783
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.783
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.768
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.768
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.768
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.768
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.768
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.768
29868.m000351 Ricinus communis 29868.m000351 N 0.768
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.768
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.768
SB01G003790 Sorghum bicolor Sb01g003790 N 0.768
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.768
MDP0000185506 Malus x domestica MDP0000185506 N 0.768
CJA01433 Caenorhabditis japonica CJA01433 N 0.768
ppa013405m Prunus persica ppa013405m N 0.768
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.768
ppa013407m Prunus persica ppa013407m N 0.768
PK21780.1 Cannabis sativa PK21780.1 N 0.768
DDB_G0286297 Dictyostelium discoideum DDB_G0286297 N 0.768
SPPG_04286 Spizellomyces punctatus SPPG_04286 N 0.765
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.765
CBG06987 Caenorhabditis briggsae CBG06987 N 0.754
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.754
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.754
CBN08400 Caenorhabditis brenneri CBN08400 N 0.754
CRE22109 Caenorhabditis remanei CRE22109 N 0.754
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.754
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.754
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.750
160.m00066 Tetrahymena thermophila 160.m00066 N 0.750
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.750
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.739
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.739
TP02_0539 Theileria parva TP02_0539 N 0.739
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.739
PVX_123875 Plasmodium vivax PVX_123875 N 0.739
PFL1200c Plasmodium falciparum PFL1200c N 0.739
EDO06533.1 Babesia bovis EDO06533.1 N 0.739
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.735
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.735
MDP0000916880 Malus x domestica MDP0000916880 N 0.725
estExt_fgenesh2_kg.C_50105 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_50105 N 0.725
CMU_001200 Cryptosporidium muris CMU_001200 N 0.725
eugene.1500010066 Ostreococcus lucimarinus eugene.1500010066 N 0.725
GP3.080340 Batrachochytrium dendrobatidis GP3.080340 N 0.721
estExt_fgenesh1_pg.C_120176 Monosiga brevicollis estExt_fgenesh1_pg.C_120176 N 0.721
ENSCHOG00000013886 Choloepus hoffmanni ENSCHOG00000013886 N 0.710
1600010087 Ostreococcus tauri 1600010087 N 0.710
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.710
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.710
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.710
32497 Aureococcus anophagefferens 32497 N 0.707