CBN09310 (Caenorhabditis brenneri)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 CBN09310 T60218_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
eIF-2alpha
M231_0.6 		Drosophila melanogaster WGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00273 		0.750
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CBN09310 S1 11 85

Links

Other S1 family RBPs
Other Caenorhabditis brenneri RBPs

202 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBN03344 Caenorhabditis brenneri CBN03344 I 1.000
CRE03750 Caenorhabditis remanei CRE03750 I 1.000
CBG22041 Caenorhabditis briggsae CBG22041 I 0.987
Y37E3.10 Caenorhabditis elegans Y37E3.10 I 0.973
PPA05168 Pristionchus pacificus PPA05168 I 0.893
Minc01303 Meloidogyne incognita Minc01303 I 0.853
Bm1_04900 Brugia malayi Bm1_04900 I 0.827
LOAG_09556 Loa loa LOAG_09556 I 0.827
WUBG_12485 Wuchereria bancrofti WUBG_12485 I 0.827
estExt_fgenesh2_pm.C_sca_10068 Lottia gigantea estExt_fgenesh2_pm.C_sca_10068 I 0.813
ISCW017360 Ixodes scapularis ISCW017360 I 0.803
e_gw1.7.228.1 Trichoplax adhaerens e_gw1.7.228.1 I 0.800
EIF2S1 Taeniopygia guttata ENSTGUG00000011542 I 0.787
EIF2S1 Tetraodon nigroviridis ENSTNIG00000012223 I 0.787
EIF2S1 Takifugu rubripes ENSTRUG00000017958 I 0.787
EIF2S1 Sorex araneus ENSSARG00000011682 I 0.787
EIF2S1 Pan troglodytes ENSPTRG00000006462 I 0.787
Eif2s1 Rattus norvegicus ENSRNOG00000009432 I 0.787
EIF2S1 Sus scrofa ENSSSCG00000002289 I 0.787
EIF2S1 Spermophilus tridecemlineatus ENSSTOG00000001565 I 0.787
XP_801812.1 Strongylocentrotus purpuratus XP_801812.1 I 0.787
EIF2S1 Anolis carolinensis ENSACAG00000005994 I 0.787
Ame_R013633 Ailuropoda melanoleuca Ame_R013633 I 0.787
EIF2S1 Canis familiaris ENSCAFG00000016386 I 0.787
XP_001176254.1 Strongylocentrotus purpuratus XP_001176254.1 I 0.787
Q7ZTK4 Xenopus laevis Q7ZTK4 I 0.787
IF2A_BOVIN Bos taurus ENSBTAG00000016311 I 0.787
EIF2S1 Procavia capensis ENSPCAG00000002613 I 0.787
AAH46576 Xenopus laevis AAH46576 I 0.787
XP_779939.1 Strongylocentrotus purpuratus XP_779939.1 I 0.787
ENSPPYG00000005921 Pongo pygmaeus ENSPPYG00000005921 I 0.787
EIF2S1 Erinaceus europaeus ENSEEUG00000010225 I 0.787
LOC100052709 Equus caballus ENSECAG00000018424 I 0.787
EIF2S1 Echinops telfairi ENSETEG00000019003 I 0.787
EIF2S1 Homo sapiens ENSG00000134001 I 0.787
EIF2S1 Oryzias latipes ENSORLG00000011844 I 0.787
Eif2s1 Dipodomys ordii ENSDORG00000002382 I 0.787
eif2s1 Danio rerio ENSDARG00000052178 I 0.787
XP_001176396.1 Strongylocentrotus purpuratus XP_001176396.1 I 0.787
LOC100399114 Callithrix jacchus ENSCJAG00000015368 I 0.787
EIF2S1 Cavia porcellus ENSCPOG00000003313 I 0.787
eif2s1l Danio rerio ENSDARG00000005827 I 0.787
IF2A_CHICK Gallus gallus ENSGALG00000009565 I 0.787
EIF2S1 Gasterosteus aculeatus ENSGACG00000008569 I 0.787
Eif2s1 Mus musculus ENSMUSG00000021116 I 0.787
EIF2S1 Ornithorhynchus anatinus ENSOANG00000005409 I 0.787
IF2A_RABIT Oryctolagus cuniculus ENSOCUG00000012023 I 0.787
EIF2S1 Ochotona princeps ENSOPRG00000004520 I 0.787
EIF2S1 Gorilla gorilla ENSGGOG00000001603 I 0.787
EIF2S1 Monodelphis domestica ENSMODG00000009911 I 0.787
EIF2S1 Loxodonta africana ENSLAFG00000013423 I 0.787
EIF2S1 Macaca mulatta ENSMMUG00000021419 I 0.787
EIF2S1 Meleagris gallopavo ENSMGAG00000011974 I 0.787
EIF2S1 Microcebus murinus ENSMICG00000010793 I 0.787
estExt_GenewiseH_1.C_750056 Nematostella vectensis estExt_GenewiseH_1.C_750056 I 0.776
PredSwiss_EST393.1 Pneumocystis carinii PredSwiss_EST393.1 I 0.776
e_gw.114.57.1 Nematostella vectensis e_gw.114.57.1 I 0.776
XP_002156465.1 Hydra magnipapillata XP_002156465.1 I 0.773
EIF2S1 Tursiops truncatus ENSTTRG00000015806 I 0.773
estExt_Genewise1Plus.C_2350006 Capitella teleta estExt_Genewise1Plus.C_2350006 I 0.773
estExt_fgenesh2_pm.C_1660010 Branchiostoma floridae estExt_fgenesh2_pm.C_1660010 I 0.773
ENSCHOG00000009030 Choloepus hoffmanni ENSCHOG00000009030 I 0.773
estExt_fgenesh2_pm.C_5760005 Branchiostoma floridae estExt_fgenesh2_pm.C_5760005 I 0.773
BGIBMGA004302 Bombyx mori BGIBMGA004302 I 0.763
AGAP011190 Anopheles gambiae AGAP011190 I 0.763
CPIJ011194 Culex quinquefasciatus CPIJ011194 I 0.763
amel4_ncbi_hmm23817 Apis mellifera amel4_ncbi_hmm23817 I 0.763
CpipJ_CPIJ011194 Culex pipiens CpipJ_CPIJ011194 I 0.763
nasonia_NCBI_hmm338664 Nasonia vitripennis nasonia_NCBI_hmm338664 I 0.763
PHUM551010 Pediculus humanus PHUM551010 I 0.763
estExt_Genewise1.C_51162 Mucor circinelloides estExt_Genewise1.C_51162 I 0.760
EIF2S1 Pteropus vampyrus ENSPVAG00000003040 I 0.760
ENSCHOG00000004230 Choloepus hoffmanni ENSCHOG00000004230 I 0.760
114622 Helobdella robusta 114622 I 0.760
RO3G_12494 Rhizopus oryzae RO3G_12494 I 0.760
estExt_Genewise1Plus.C_230113 Phycomyces blakesleeanus estExt_Genewise1Plus.C_230113 I 0.760
RO3G_13185 Rhizopus oryzae RO3G_13185 I 0.760
CAOG_02542 Capsaspora owczarzaki CAOG_02542 I 0.753
PASA_GEN_0500123 Daphnia pulex PASA_GEN_0500123 I 0.750
estExt_fgenesh1_pg.C_210136 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_210136 I 0.750
SNOG_13280 Stagonospora nodorum SNOG_13280 I 0.750
eIF-2alpha Drosophila melanogaster FBgn0261609 D 0.750
GL20268 Drosophila persimilis FBgn0157863 I 0.750
GM13399 Drosophila sechellia FBgn0168330 I 0.750
GD15749 Drosophila simulans FBgn0187410 I 0.750
GJ19141 Drosophila virilis FBgn0206286 I 0.750
GI21763 Drosophila mojavensis FBgn0144493 I 0.750
GG19321 Drosophila erecta FBgn0111525 I 0.750
EIF2S1 Tarsius syrichta ENSTSYG00000014171 I 0.750
GA22144-RA Drosophila pseudoobscura FBgn0082124 I 0.750
GF19374 Drosophila ananassae FBgn0096384 I 0.750
EAT79164.1 Phaeosphaeria nodorum EAT79164.1 I 0.750
GK25248 Drosophila willistoni FBgn0227207 I 0.750
AB05699.1 Alternaria brassicicola AB05699.1 I 0.750
PTRG_05239 Pyrenophora tritici repentis PTRG_05239 I 0.750
GE15968 Drosophila yakuba FBgn0233524 I 0.750
e_gw1.18.114.1 Tremella mesenterica e_gw1.18.114.1 I 0.750
AAEL013675 Aedes aegypti AAEL013675 I 0.750
ENSCHOG00000003744 Choloepus hoffmanni ENSCHOG00000003744 I 0.747
SPPG_00622 Spizellomyces punctatus SPPG_00622 I 0.747
e_gw1.3.2112.1 Cryphonectria parasitica e_gw1.3.2112.1 I 0.737
estExt_Genewise1.C_30452 Schizophyllum commune estExt_Genewise1.C_30452 I 0.737
fgenesh1_pm.C_scaffold_10000060 Batrachochytrium dendrobatidis fgenesh1_pm.C_scaffold_10000060 I 0.737
THAPSDRAFT_105 Thalassiosira pseudonana Thaps105 I 0.737
CC1G_08524 Coprinopsis cinerea CC1G_08524 I 0.737
YALI0B01034g Yarrowia lipolytica YALI0B01034g I 0.737
e_gwh1.12.106.1 Laccaria bicolor e_gwh1.12.106.1 I 0.737
UM01463 Ustilago maydis UM01463 I 0.737
fgenesh1_pm.C_scaffold_69000005 Phytophthora ramorum fgenesh1_pm.C_scaffold_69000005 I 0.733
PITG_07885 Phytophthora infestans PITG_07885 I 0.733
72304 Aureococcus anophagefferens 72304 I 0.733
69770 Aureococcus anophagefferens 69770 I 0.733
estExt_fgenesh1_kg.C_130002 Sporobolomyces roseus estExt_fgenesh1_kg.C_130002 I 0.733
MDP0000155133 Malus x domestica MDP0000155133 I 0.733
cgd7_5270 Cryptosporidium parvum cgd7_5270 I 0.733
fgenesh1_pg.C_scaffold_2000543 Melampsora laricis populina fgenesh1_pg.C_scaffold_2000543 I 0.733
Chro.70587 Cryptosporidium hominis Chro.70587 I 0.733
estExt_fgenesh2_pg.C_150109 Monosiga brevicollis estExt_fgenesh2_pg.C_150109 I 0.733
CHGG_04762 Chaetomium globosum CHGG_04762 I 0.724
MGG_13200 Magnaporthe oryzae MGG_13200 I 0.724
estExt_Genewise1Plus.C_80350 Agaricus bisporus estExt_Genewise1Plus.C_80350 I 0.724
estExt_Genewise1.C_110295 Coccomyxa C 169 estExt_Genewise1.C_110295 I 0.724
genemark.2222_g Pleurotus ostreatus genemark.2222_g I 0.724
GLRG_02833 Colletotrichum graminicola GLRG_02833 I 0.724
Pa_6_5980 Podospora anserina Pa_6_5980 I 0.724
estExt_Genewise1.C_100332 Chlorella vulgaris estExt_Genewise1.C_100332 I 0.724
FGSG_06220 Fusarium graminearum FGSG_06220 I 0.724
cassava7659.valid.m1 Manihot esculenta cassava7659.valid.m1 I 0.724
VDBG_01622 Verticillium albo atrum VDBG_01622 I 0.724
VDAG_01930 Verticillium dahliae VDAG_01930 I 0.724
estExt_fgenesh1_kg.C_10157 Myceliophthora thermophila estExt_fgenesh1_kg.C_10157 I 0.724
EDP42051.1 Malassezia globosa EDP42051.1 I 0.724
NCU08277 Neurospora crassa NCU08277 I 0.724
cassava7658.valid.m1 Manihot esculenta cassava7658.valid.m1 I 0.724
estExt_fgenesh2_kg.C_40048 Neurospora tetrasperma estExt_fgenesh2_kg.C_40048 I 0.724
e_gww2.12.213.1 Phanerochaete chrysosporium e_gww2.12.213.1 I 0.724
estExt_Genewise1.C_100122 Postia placenta estExt_Genewise1.C_100122 I 0.724
estExt_Genewise1Plus.C_10999 Thielavia terrestris estExt_Genewise1Plus.C_10999 I 0.724
estExt_fgenesh3_kg.C_30291 Neurospora discreta estExt_fgenesh3_kg.C_30291 I 0.724
Medtr3g094720 Medicago truncatula Medtr3g094720 I 0.724
AMAG_01618 Allomyces macrogynus AMAG_01618 I 0.720
NCLIV_056550 Neospora caninum NCLIV_056550 I 0.720
TGME49_113230 Toxoplasma gondii TGME49_113230 I 0.720
TGGT1_089620 Toxoplasma gondii TGGT1_089620 I 0.720
AMSG_04936 Thecamonas trahens AMSG_04936 I 0.720
tif211 Schizosaccharomyces pombe SPAC3G9.09c I 0.720
CMU_019420 Cryptosporidium muris CMU_019420 N 0.720
TGVEG_097260 Toxoplasma gondii TGVEG_097260 I 0.720
AMAG_04113 Allomyces macrogynus AMAG_04113 I 0.720
cassava16515.m1 Manihot esculenta cassava16515.m1 I 0.720
HCAG_01136 Histoplasma capsulatum HCAG_01136 I 0.720
SPOG_03916 Schizosaccharomyces cryophilus SPOG_03916 I 0.720
SOCG_01617 Schizosaccharomyces octosporus SOCG_01617 I 0.720
SJAG_03629 Schizosaccharomyces japonicus SJAG_03629 I 0.720
KLLA0A11814g Kluyveromyces lactis KLLA0A11814g I 0.720
FVEG_06185 Fusarium verticillioides FVEG_06185 I 0.711
AT2G40290 Arabidopsis thaliana AT2G40290-TAIR-G I 0.711
CIMG_00109 Coccidioides immitis CIMG_00109 I 0.711
FOXG_08491 Fusarium oxysporum FOXG_08491 I 0.711
CPSG_04829 Coccidioides posadasii CPSG_04829 I 0.711
DGIL_AUG5s12507g4t1 Acyrtosiphon pisum DGIL_AUG5s12507g4t1 I 0.711
PK10564.1 Cannabis sativa PK10564.1 I 0.711
estExt_fgenesh4_pg.C_220183 Volvox carteri estExt_fgenesh4_pg.C_220183 I 0.711
estExt_fgenesh2_kg.C_20112 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_20112 I 0.711
estExt_fgenesh1_pm.C_chr_100036 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_100036 I 0.711
estExt_fgenesh1_pg.C_20141 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_20141 I 0.711
estExt_Genewise1.C_100430 Trichoderma atroviride estExt_Genewise1.C_100430 I 0.711
estExt_Genewise1.C_10111 Trichoderma reesei estExt_Genewise1.C_10111 I 0.711
estExt_Genewise1Plus.C_sca_18_chr2_1_00859 Nectria haematococca estExt_Genewise1Plus.C_sca_18_chr2_1_00859 I 0.711
BDBG_06604 Blastomyces dermatitidis BDBG_06604 I 0.711
e_gwW.11.341.1 Chlamydomonas reinhardtii e_gwW.11.341.1 I 0.711
Cucsa.239320 Cucumis sativus Cucsa.239320 I 0.711
GSVIVG00024676001 Vitis vinifera GSVIVG00024676001 I 0.711
XM_002881666.1 Arabidopsis lyrata fgenesh2_kg.4__2141__AT2G40290.1 I 0.711
PHATRDRAFT_34538 Phaeodactylum tricornutum Phatr34538 I 0.711
B9HHU6_POPTR Populus trichocarpa POPTR_0008s07250 I 0.711
29607.m000238 Ricinus communis 29607.m000238 I 0.711
B9HSK1_POPTR Populus trichocarpa POPTR_0010s19230 I 0.711
Glyma11g35600.1 Glycine max Glyma11g35600.1 I 0.711
estExt_Genewise1.C_21511 Trichoderma virens estExt_Genewise1.C_21511 I 0.711
estExt_fgenesh2_kg.C_21286 Serpula lacrymans estExt_fgenesh2_kg.C_21286 I 0.711
MDP0000663428 Malus x domestica MDP0000663428 I 0.711
Glyma18g02820.1 Glycine max Glyma18g02820.1 I 0.711
LjSGA_031492.1 Lotus japonicus LjSGA_031492.1 I 0.711
KLTH0B02002g Kluyveromyces thermotolerans KLTH0B02002g I 0.711
estExt_fgenesh2_pm.C_120283 Heterobasidion annosum estExt_fgenesh2_pm.C_120283 I 0.711
PMAA_021520 Penicillium marneffei PMAA_021520 I 0.711
ppa008120m Prunus persica ppa008120m I 0.711
Medtr3g094730 Medicago truncatula Medtr3g094730 I 0.711
Medtr3g094740 Medicago truncatula Medtr3g094740 I 0.711
BC1G_14334 Botrytis cinerea BC1G_14334 I 0.711
Kwal_15422 Kluyveromyces waltii Kwal_15422 I 0.711
XM_002873169.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6000426 N 0.707
ARB_05709 Arthroderma benhamiae ARB_05709 I 0.707
MCYG_00123 Microsporum canis MCYG_00123 I 0.707
MGYG_00686 Microsporum gypseum MGYG_00686 I 0.707
IGS.gm_12_00191 Chlorella NC64A IGS.gm_12_00191 I 0.707
TEQG_01370 Trichophyton equinum TEQG_01370 I 0.707
TERG_00559 Trichophyton rubrum TERG_00559 I 0.707
TRV_03711 Trichophyton verrucosum TRV_03711 I 0.707
TESG_05324 Trichophyton tonsurans TESG_05324 I 0.707
estExt_fgenesh1_pm.C_210071 Selaginella moellendorfii estExt_fgenesh1_pm.C_210071 I 0.707