PPA05168 (Pristionchus pacificus)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 PPA05168 T60754_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
eIF-2alpha
M231_0.6 		Drosophila melanogaster WGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00273 		0.776
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PPA05168 S1 13 87

Links

Other S1 family RBPs
Other Pristionchus pacificus RBPs

231 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBN03344 Caenorhabditis brenneri CBN03344 I 0.893
CRE03750 Caenorhabditis remanei CRE03750 I 0.893
CBN09310 Caenorhabditis brenneri CBN09310 I 0.893
CBG22041 Caenorhabditis briggsae CBG22041 I 0.880
Y37E3.10 Caenorhabditis elegans Y37E3.10 I 0.880
Minc01303 Meloidogyne incognita Minc01303 I 0.880
WUBG_12485 Wuchereria bancrofti WUBG_12485 I 0.853
LOAG_09556 Loa loa LOAG_09556 I 0.853
Bm1_04900 Brugia malayi Bm1_04900 I 0.853
estExt_fgenesh2_pm.C_sca_10068 Lottia gigantea estExt_fgenesh2_pm.C_sca_10068 I 0.840
e_gw1.7.228.1 Trichoplax adhaerens e_gw1.7.228.1 I 0.827
EIF2S1 Gorilla gorilla ENSGGOG00000001603 I 0.813
EIF2S1 Meleagris gallopavo ENSMGAG00000011974 I 0.813
IF2A_CHICK Gallus gallus ENSGALG00000009565 I 0.813
EIF2S1 Gasterosteus aculeatus ENSGACG00000008569 I 0.813
EIF2S1 Homo sapiens ENSG00000134001 I 0.813
EIF2S1 Microcebus murinus ENSMICG00000010793 I 0.813
EIF2S1 Macaca mulatta ENSMMUG00000021419 I 0.813
EIF2S1 Ornithorhynchus anatinus ENSOANG00000005409 I 0.813
IF2A_RABIT Oryctolagus cuniculus ENSOCUG00000012023 I 0.813
Eif2s1 Mus musculus ENSMUSG00000021116 I 0.813
XP_002156465.1 Hydra magnipapillata XP_002156465.1 I 0.813
EIF2S1 Monodelphis domestica ENSMODG00000009911 I 0.813
EIF2S1 Echinops telfairi ENSETEG00000019003 I 0.813
EIF2S1 Erinaceus europaeus ENSEEUG00000010225 I 0.813
IF2A_BOVIN Bos taurus ENSBTAG00000016311 I 0.813
EIF2S1 Canis familiaris ENSCAFG00000016386 I 0.813
Ame_R013633 Ailuropoda melanoleuca Ame_R013633 I 0.813
EIF2S1 Anolis carolinensis ENSACAG00000005994 I 0.813
AAH46576 Xenopus laevis AAH46576 I 0.813
LOC100399114 Callithrix jacchus ENSCJAG00000015368 I 0.813
EIF2S1 Ochotona princeps ENSOPRG00000004520 I 0.813
Eif2s1 Dipodomys ordii ENSDORG00000002382 I 0.813
LOC100052709 Equus caballus ENSECAG00000018424 I 0.813
eif2s1 Danio rerio ENSDARG00000052178 I 0.813
eif2s1l Danio rerio ENSDARG00000005827 I 0.813
EIF2S1 Cavia porcellus ENSCPOG00000003313 I 0.813
Q7ZTK4 Xenopus laevis Q7ZTK4 I 0.813
EIF2S1 Loxodonta africana ENSLAFG00000013423 I 0.813
EIF2S1 Sus scrofa ENSSSCG00000002289 I 0.813
EIF2S1 Sorex araneus ENSSARG00000011682 I 0.813
Eif2s1 Rattus norvegicus ENSRNOG00000009432 I 0.813
EIF2S1 Taeniopygia guttata ENSTGUG00000011542 I 0.813
EIF2S1 Tetraodon nigroviridis ENSTNIG00000012223 I 0.813
EIF2S1 Oryzias latipes ENSORLG00000011844 I 0.813
EIF2S1 Takifugu rubripes ENSTRUG00000017958 I 0.813
EIF2S1 Pan troglodytes ENSPTRG00000006462 I 0.813
EIF2S1 Spermophilus tridecemlineatus ENSSTOG00000001565 I 0.813
EIF2S1 Procavia capensis ENSPCAG00000002613 I 0.813
ENSPPYG00000005921 Pongo pygmaeus ENSPPYG00000005921 I 0.813
e_gw.114.57.1 Nematostella vectensis e_gw.114.57.1 I 0.803
estExt_GenewiseH_1.C_750056 Nematostella vectensis estExt_GenewiseH_1.C_750056 I 0.803
XP_001176396.1 Strongylocentrotus purpuratus XP_001176396.1 I 0.800
ENSCHOG00000009030 Choloepus hoffmanni ENSCHOG00000009030 I 0.800
XP_001176254.1 Strongylocentrotus purpuratus XP_001176254.1 I 0.800
EIF2S1 Tursiops truncatus ENSTTRG00000015806 I 0.800
XP_779939.1 Strongylocentrotus purpuratus XP_779939.1 I 0.800
estExt_Genewise1Plus.C_2350006 Capitella teleta estExt_Genewise1Plus.C_2350006 I 0.800
XP_801812.1 Strongylocentrotus purpuratus XP_801812.1 I 0.800
nasonia_NCBI_hmm338664 Nasonia vitripennis nasonia_NCBI_hmm338664 I 0.789
AGAP011190 Anopheles gambiae AGAP011190 I 0.789
amel4_ncbi_hmm23817 Apis mellifera amel4_ncbi_hmm23817 I 0.789
BGIBMGA004302 Bombyx mori BGIBMGA004302 I 0.789
CPIJ011194 Culex quinquefasciatus CPIJ011194 I 0.789
CpipJ_CPIJ011194 Culex pipiens CpipJ_CPIJ011194 I 0.789
PHUM551010 Pediculus humanus PHUM551010 I 0.789
ISCW017360 Ixodes scapularis ISCW017360 I 0.789
RO3G_12494 Rhizopus oryzae RO3G_12494 I 0.787
RO3G_13185 Rhizopus oryzae RO3G_13185 I 0.787
EIF2S1 Pteropus vampyrus ENSPVAG00000003040 I 0.787
estExt_Genewise1.C_51162 Mucor circinelloides estExt_Genewise1.C_51162 I 0.787
ENSCHOG00000004230 Choloepus hoffmanni ENSCHOG00000004230 I 0.787
estExt_Genewise1Plus.C_230113 Phycomyces blakesleeanus estExt_Genewise1Plus.C_230113 I 0.787
AAEL013675 Aedes aegypti AAEL013675 I 0.776
GJ19141 Drosophila virilis FBgn0206286 I 0.776
eIF-2alpha Drosophila melanogaster FBgn0261609 D 0.776
GD15749 Drosophila simulans FBgn0187410 I 0.776
GE15968 Drosophila yakuba FBgn0233524 I 0.776
GK25248 Drosophila willistoni FBgn0227207 I 0.776
GA22144-RA Drosophila pseudoobscura FBgn0082124 I 0.776
GM13399 Drosophila sechellia FBgn0168330 I 0.776
PASA_GEN_0500123 Daphnia pulex PASA_GEN_0500123 I 0.776
GF19374 Drosophila ananassae FBgn0096384 I 0.776
PredSwiss_EST393.1 Pneumocystis carinii PredSwiss_EST393.1 I 0.776
GG19321 Drosophila erecta FBgn0111525 I 0.776
EIF2S1 Tarsius syrichta ENSTSYG00000014171 I 0.776
GL20268 Drosophila persimilis FBgn0157863 I 0.776
GI21763 Drosophila mojavensis FBgn0144493 I 0.776
ENSCHOG00000003744 Choloepus hoffmanni ENSCHOG00000003744 I 0.773
estExt_fgenesh2_pm.C_1660010 Branchiostoma floridae estExt_fgenesh2_pm.C_1660010 I 0.773
estExt_fgenesh2_pm.C_5760005 Branchiostoma floridae estExt_fgenesh2_pm.C_5760005 I 0.773
114622 Helobdella robusta 114622 I 0.773
CAOG_02542 Capsaspora owczarzaki CAOG_02542 I 0.766
estExt_fgenesh1_pg.C_210136 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_210136 I 0.763
PHATRDRAFT_34538 Phaeodactylum tricornutum Phatr34538 I 0.763
PTRG_05239 Pyrenophora tritici repentis PTRG_05239 I 0.763
e_gw1.18.114.1 Tremella mesenterica e_gw1.18.114.1 I 0.763
EAT79164.1 Phaeosphaeria nodorum EAT79164.1 I 0.763
SNOG_13280 Stagonospora nodorum SNOG_13280 I 0.763
AB05699.1 Alternaria brassicicola AB05699.1 I 0.763
SPPG_00622 Spizellomyces punctatus SPPG_00622 I 0.760
estExt_fgenesh2_pg.C_150109 Monosiga brevicollis estExt_fgenesh2_pg.C_150109 I 0.760
CC1G_08524 Coprinopsis cinerea CC1G_08524 I 0.750
estExt_Genewise1.C_30452 Schizophyllum commune estExt_Genewise1.C_30452 I 0.750
fgenesh1_pm.C_scaffold_10000060 Batrachochytrium dendrobatidis fgenesh1_pm.C_scaffold_10000060 I 0.750
e_gwh1.12.106.1 Laccaria bicolor e_gwh1.12.106.1 I 0.750
Kwal_15422 Kluyveromyces waltii Kwal_15422 I 0.750
KLTH0B02002g Kluyveromyces thermotolerans KLTH0B02002g I 0.750
e_gw1.3.2112.1 Cryphonectria parasitica e_gw1.3.2112.1 I 0.750
Aqu1.220878 Amphimedon queenslandica Aqu1.220878 I 0.750
THAPSDRAFT_105 Thalassiosira pseudonana Thaps105 I 0.750
NCLIV_056550 Neospora caninum NCLIV_056550 I 0.747
TGVEG_097260 Toxoplasma gondii TGVEG_097260 I 0.747
69770 Aureococcus anophagefferens 69770 I 0.747
72304 Aureococcus anophagefferens 72304 I 0.747
TGGT1_089620 Toxoplasma gondii TGGT1_089620 I 0.747
KLLA0A11814g Kluyveromyces lactis KLLA0A11814g I 0.747
TGME49_113230 Toxoplasma gondii TGME49_113230 I 0.747
IGS.gm_12_00191 Chlorella NC64A IGS.gm_12_00191 I 0.747
e_gww2.12.213.1 Phanerochaete chrysosporium e_gww2.12.213.1 I 0.737
DGIL_AUG5s12507g4t1 Acyrtosiphon pisum DGIL_AUG5s12507g4t1 I 0.737
ZYRO0G12056g Zygosaccharomyces rouxii ZYRO0G12056g I 0.737
SAKL0G14058g Lachancea kluyveri SAKL0G14058g I 0.737
YALI0B01034g Yarrowia lipolytica YALI0B01034g I 0.737
estExt_Genewise1Plus.C_80350 Agaricus bisporus estExt_Genewise1Plus.C_80350 I 0.737
genemark.2222_g Pleurotus ostreatus genemark.2222_g I 0.737
UM01463 Ustilago maydis UM01463 I 0.737
estExt_fgenesh3_kg.C_30291 Neurospora discreta estExt_fgenesh3_kg.C_30291 I 0.737
estExt_Genewise1.C_100122 Postia placenta estExt_Genewise1.C_100122 I 0.737
estExt_Genewise1Plus.C_10999 Thielavia terrestris estExt_Genewise1Plus.C_10999 I 0.737
estExt_fgenesh1_kg.C_10157 Myceliophthora thermophila estExt_fgenesh1_kg.C_10157 I 0.737
NCU08277 Neurospora crassa NCU08277 I 0.737
A7TIH9_VANPO Vanderwaltozyma polyspora A7TIH9_VANPO I 0.737
CHGG_04762 Chaetomium globosum CHGG_04762 I 0.737
Pa_6_5980 Podospora anserina Pa_6_5980 I 0.737
AGR320W Ashbya gossypii AGR320W I 0.737
estExt_fgenesh2_kg.C_40048 Neurospora tetrasperma estExt_fgenesh2_kg.C_40048 I 0.737
XP_002492289.1 Pichia pastoris XP_002492289.1 I 0.737
CAGL0B03795g Candida glabrata CAGL0B03795g I 0.737
EDP42051.1 Malassezia globosa EDP42051.1 I 0.737
Scas_Contig617.9 Saccharomyces castellii Scas_Contig617.9 I 0.733
Scas_Contig479.2 Saccharomyces castellii Scas_Contig479.2 I 0.733
fgenesh1_pm.C_scaffold_69000005 Phytophthora ramorum fgenesh1_pm.C_scaffold_69000005 I 0.733
fgenesh1_pg.C_scaffold_2000543 Melampsora laricis populina fgenesh1_pg.C_scaffold_2000543 I 0.733
fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 Emiliania huxleyi fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 I 0.733
estExt_fgenesh1_kg.C_130002 Sporobolomyces roseus estExt_fgenesh1_kg.C_130002 I 0.733
HCAG_01136 Histoplasma capsulatum HCAG_01136 I 0.733
MDP0000155133 Malus x domestica MDP0000155133 I 0.733
PITG_07885 Phytophthora infestans PITG_07885 I 0.733
cassava7658.valid.m1 Manihot esculenta cassava7658.valid.m1 I 0.724
estExt_fgenesh2_kg.C_21286 Serpula lacrymans estExt_fgenesh2_kg.C_21286 I 0.724
estExt_Genewise1Plus.C_sca_18_chr2_1_00859 Nectria haematococca estExt_Genewise1Plus.C_sca_18_chr2_1_00859 I 0.724
estExt_fgenesh2_kg.C_20112 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_20112 I 0.724
cassava7659.valid.m1 Manihot esculenta cassava7659.valid.m1 I 0.724
GLRG_02833 Colletotrichum graminicola GLRG_02833 I 0.724
CPSG_04829 Coccidioides posadasii CPSG_04829 I 0.724
CIMG_00109 Coccidioides immitis CIMG_00109 I 0.724
Skud_Contig1955.10 Saccharomyces kudriavzevii Skud_Contig1955.10 I 0.724
FOXG_08491 Fusarium oxysporum FOXG_08491 I 0.724
FVEG_06185 Fusarium verticillioides FVEG_06185 I 0.724
MGG_13200 Magnaporthe oryzae MGG_13200 I 0.724
estExt_Genewise1.C_21511 Trichoderma virens estExt_Genewise1.C_21511 I 0.724
VDAG_01930 Verticillium dahliae VDAG_01930 I 0.724
VDBG_01622 Verticillium albo atrum VDBG_01622 I 0.724
estExt_fgenesh1_pg.C_20141 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_20141 I 0.724
PMAA_021520 Penicillium marneffei PMAA_021520 I 0.724
estExt_fgenesh1_pm.C_chr_100036 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_100036 I 0.724
BC1G_14334 Botrytis cinerea BC1G_14334 I 0.724
estExt_Genewise1.C_100430 Trichoderma atroviride estExt_Genewise1.C_100430 I 0.724
estExt_fgenesh2_pm.C_120283 Heterobasidion annosum estExt_fgenesh2_pm.C_120283 I 0.724
estExt_Genewise1.C_10111 Trichoderma reesei estExt_Genewise1.C_10111 I 0.724
estExt_Genewise1.C_100332 Chlorella vulgaris estExt_Genewise1.C_100332 I 0.724
estExt_Genewise1.C_110295 Coccomyxa C 169 estExt_Genewise1.C_110295 I 0.724
Medtr3g094720 Medicago truncatula Medtr3g094720 I 0.724
BDBG_06604 Blastomyces dermatitidis BDBG_06604 I 0.724
eif2s1 Xenopus tropicalis ENSXETG00000011221 I 0.720
estExt_fgenesh1_pm.C_210071 Selaginella moellendorfii estExt_fgenesh1_pm.C_210071 I 0.720
estExt_fgenesh1_kg.C_70012 Micromonas pusilla estExt_fgenesh1_kg.C_70012 I 0.720
cassava16515.m1 Manihot esculenta cassava16515.m1 I 0.720
estExt_fgenesh1_pg.C_Chr_02.00010078 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_02.00010078 I 0.720
SPOG_03916 Schizosaccharomyces cryophilus SPOG_03916 I 0.720
TEQG_01370 Trichophyton equinum TEQG_01370 I 0.720
TERG_00559 Trichophyton rubrum TERG_00559 I 0.720
TESG_05324 Trichophyton tonsurans TESG_05324 I 0.720
SJAG_03629 Schizosaccharomyces japonicus SJAG_03629 I 0.720
MGYG_00686 Microsporum gypseum MGYG_00686 I 0.720
AMSG_04936 Thecamonas trahens AMSG_04936 I 0.720
ARB_05709 Arthroderma benhamiae ARB_05709 I 0.720
tif211 Schizosaccharomyces pombe SPAC3G9.09c I 0.720
MCYG_00123 Microsporum canis MCYG_00123 I 0.720
TRV_03711 Trichophyton verrucosum TRV_03711 I 0.720
SOCG_01617 Schizosaccharomyces octosporus SOCG_01617 I 0.720
CPAG_01889 Candida parapsilosis CPAG_01889 I 0.711
29607.m000238 Ricinus communis 29607.m000238 I 0.711
CLUG_04130 Candida lusitaniae CLUG_04130 I 0.711
CTRG_04191 Candida tropicalis CTRG_04191 I 0.711
DEHA0F26235g Debaryomyces hansenii DEHA0F26235g I 0.711
LjSGA_031492.1 Lotus japonicus LjSGA_031492.1 I 0.711
LELG_00811 Lodderomyces elongisporus LELG_00811 I 0.711
FGSG_06220 Fusarium graminearum FGSG_06220 I 0.711
Glyma18g02820.1 Glycine max Glyma18g02820.1 I 0.711
MDP0000663428 Malus x domestica MDP0000663428 I 0.711
ppa008120m Prunus persica ppa008120m I 0.711
B9HHU6_POPTR Populus trichocarpa POPTR_0008s07250 I 0.711
B9HSK1_POPTR Populus trichocarpa POPTR_0010s19230 I 0.711
SUI2 Saccharomyces cerevisiae YJR007W I 0.711
Medtr3g094740 Medicago truncatula Medtr3g094740 I 0.711
XM_002881666.1 Arabidopsis lyrata fgenesh2_kg.4__2141__AT2G40290.1 I 0.711
GSVIVG00024676001 Vitis vinifera GSVIVG00024676001 I 0.711
12209_YJR007W Saccharomyces mikatae 12209_YJR007W I 0.711
Cucsa.239320 Cucumis sativus Cucsa.239320 I 0.711
Glyma11g35600.1 Glycine max Glyma11g35600.1 I 0.711
estExt_fgenesh4_pg.C_220183 Volvox carteri estExt_fgenesh4_pg.C_220183 I 0.711
UREG_00217 Uncinocarpus reesii UREG_00217 I 0.711
ATEG_04051 Aspergillus terreus CADATEAG00009463 I 0.711
fgenesh1_pm.00077_#_3 Aspergillus carbonarius fgenesh1_pm.00077_#_3 I 0.711
PK10564.1 Cannabis sativa PK10564.1 I 0.711
AFLA_020350 Aspergillus flavus CADAFLAG00003920 I 0.711
ACLA_041660 Aspergillus clavatus CADACLAG00004024 I 0.711
AT2G40290 Arabidopsis thaliana AT2G40290-TAIR-G I 0.711
estExt_gwp_gw1.C_3520018 Physcomitrella patens estExt_gwp_gw1.C_3520018 I 0.711
NFIA_063860 Neosartorya fischeri CADNFIAG00005762 I 0.711
13294_YJR007W Saccharomyces bayanus 13294_YJR007W I 0.711
e_gwW.11.341.1 Chlamydomonas reinhardtii e_gwW.11.341.1 I 0.711
12331_YJR007W Saccharomyces paradoxus 12331_YJR007W I 0.711
ANIA_03156 Aspergillus nidulans CADANIAG00009914 I 0.711
GSTUMT00002346001 Tuber melanosporum GSTUMT00002346001 I 0.711
Medtr3g094730 Medicago truncatula Medtr3g094730 I 0.711
fgenesh1_pg.scaffold_55000187 Physcomitrella patens fgenesh1_pg.scaffold_55000187 I 0.711
PTSG_05806 Salpingoeca rosetta PTSG_05806 I 0.707
estExt_fgenesh1_pg.C_210283 Phytophthora capsici estExt_fgenesh1_pg.C_210283 I 0.707