XM_002892481.1 (Arabidopsis lyrata)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 fgenesh2_kg.1__1037__AT1G09810.1 T62203_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__1037__AT1G09810.1 YTH 285 375

Links

Other YTH family RBPs
Other Arabidopsis lyrata RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ECT11 Arabidopsis thaliana AT1G09810-TAIR-G N 1.000
ppa003557m Prunus persica ppa003557m N 0.769
MDP0000256033 Malus x domestica MDP0000256033 N 0.769
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.747
PK26094.1 Cannabis sativa PK26094.1 N 0.747
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.747
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.747
MDP0000488248 Malus x domestica MDP0000488248 N 0.747
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.747
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.736
29765.m000746 Ricinus communis 29765.m000746 N 0.736
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.725
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.725
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.714
mgf019846m Mimulus guttatus mgf019846m N 0.714
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.714
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.714
MDP0000171737 Malus x domestica MDP0000171737 N 0.703
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.703