mgf019846m (Mimulus guttatus)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 mgf019846m T62431_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf019846m YTH 295 385

Links

Other YTH family RBPs
Other Mimulus guttatus RBPs

133 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
mgf001716m Mimulus guttatus mgf001716m N 0.868
mgf014829m Mimulus guttatus mgf014829m N 0.868
PK26094.1 Cannabis sativa PK26094.1 N 0.824
MDP0000256033 Malus x domestica MDP0000256033 N 0.824
MDP0000488248 Malus x domestica MDP0000488248 N 0.802
ppa003557m Prunus persica ppa003557m N 0.802
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.802
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.791
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.791
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.791
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.791
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.791
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.780
ppa003664m Prunus persica ppa003664m N 0.780
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.780
SB09G000580 Sorghum bicolor Sb09g000580 N 0.769
SB07G024500 Sorghum bicolor Sb07g024500 N 0.769
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.769
29765.m000746 Ricinus communis 29765.m000746 N 0.769
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.769
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.769
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.769
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.769
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.758
29955.m001158 Ricinus communis 29955.m001158 N 0.758
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.758
ppa018635m Prunus persica ppa018635m N 0.758
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.758
MDP0000231231 Malus x domestica MDP0000231231 N 0.758
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.758
29889.m003364 Ricinus communis 29889.m003364 N 0.758
MDP0000171737 Malus x domestica MDP0000171737 N 0.758
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.758
MDP0000286471 Malus x domestica MDP0000286471 N 0.758
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.758
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.758
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.747
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.747
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.747
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.747
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.747
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.747
SB07G006330 Sorghum bicolor Sb07g006330 N 0.747
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.747
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.747
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.747
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.747
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.747
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.739
LjSGA_044186.1 Lotus japonicus LjSGA_044186.1 N 0.739
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.736
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.736
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.736
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.736
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.736
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.736
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.736
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.736
SB01G008170 Sorghum bicolor Sb01g008170 N 0.736
PK02315.1 Cannabis sativa PK02315.1 N 0.736
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.736
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.736
MDP0000617859 Malus x domestica MDP0000617859 N 0.725
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.725
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.725
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.725
MDP0000405927 Malus x domestica MDP0000405927 N 0.725
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.725
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.725
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.725
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.725
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.725
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.725
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.725
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.725
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.725
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.725
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.725
MDP0000287088 Malus x domestica MDP0000287088 N 0.725
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.725
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.725
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.725
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.725
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.714
mgf014143m Mimulus guttatus mgf014143m N 0.714
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.714
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.714
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.714
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.714
SB06G027960 Sorghum bicolor Sb06g027960 N 0.714
mgf015583m Mimulus guttatus mgf015583m N 0.714
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.714
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.714
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.714
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.714
MDP0000552419 Malus x domestica MDP0000552419 N 0.714
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.714
SB03G031190 Sorghum bicolor Sb03g031190 N 0.714
PK23104.1 Cannabis sativa PK23104.1 N 0.714
PK05579.1 Cannabis sativa PK05579.1 N 0.714
ECT11 Arabidopsis thaliana AT1G09810-TAIR-G N 0.714
MDP0000306387 Malus x domestica MDP0000306387 N 0.714
MDP0000248088 Malus x domestica MDP0000248088 N 0.714
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.714
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.714
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.714
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.714
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.714
MDP0000132385 Malus x domestica MDP0000132385 N 0.714
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.714
XM_002892481.1 Arabidopsis lyrata fgenesh2_kg.1__1037__AT1G09810.1 N 0.714
mgf017987m Mimulus guttatus mgf017987m N 0.703
ppa002588m Prunus persica ppa002588m N 0.703
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.703
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.703
ppa002483m Prunus persica ppa002483m N 0.703
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.703
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.703
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.703
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.703
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.703
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.703
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.703
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.703
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.703
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.703
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.703
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.703
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.703
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.703
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.703
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.703
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.703