PK26094.1 (Cannabis sativa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 PK26094.1 T61913_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK26094.1 YTH 448 538

Links

Other YTH family RBPs
Other Cannabis sativa RBPs

140 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa003557m Prunus persica ppa003557m N 0.923
MDP0000256033 Malus x domestica MDP0000256033 N 0.890
MDP0000488248 Malus x domestica MDP0000488248 N 0.890
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.846
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.846
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.846
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.846
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.846
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.846
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.835
mgf019846m Mimulus guttatus mgf019846m N 0.824
MDP0000171737 Malus x domestica MDP0000171737 N 0.824
29765.m000746 Ricinus communis 29765.m000746 N 0.824
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.813
mgf014829m Mimulus guttatus mgf014829m N 0.813
mgf001716m Mimulus guttatus mgf001716m N 0.813
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.802
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.802
29955.m001158 Ricinus communis 29955.m001158 N 0.802
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.802
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.802
ppa003664m Prunus persica ppa003664m N 0.791
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.791
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.791
MDP0000231231 Malus x domestica MDP0000231231 N 0.780
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.780
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.780
MDP0000286471 Malus x domestica MDP0000286471 N 0.780
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.780
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.769
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.769
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.769
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.769
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.769
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.758
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.758
SB03G031190 Sorghum bicolor Sb03g031190 N 0.758
SB07G006330 Sorghum bicolor Sb07g006330 N 0.758
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.758
ppa018635m Prunus persica ppa018635m N 0.758
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.758
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.758
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.758
PK23104.1 Cannabis sativa PK23104.1 N 0.758
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.758
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.750
MDP0000287088 Malus x domestica MDP0000287088 N 0.747
MDP0000617859 Malus x domestica MDP0000617859 N 0.747
MDP0000405927 Malus x domestica MDP0000405927 N 0.747
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.747
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.747
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.747
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.747
ECT11 Arabidopsis thaliana AT1G09810-TAIR-G N 0.747
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.747
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.747
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.747
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.747
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.747
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.747
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.747
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.747
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.747
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.747
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.747
XM_002892481.1 Arabidopsis lyrata fgenesh2_kg.1__1037__AT1G09810.1 N 0.747
MDP0000248088 Malus x domestica MDP0000248088 N 0.736
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.736
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.736
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.736
MDP0000132385 Malus x domestica MDP0000132385 N 0.736
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.736
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.736
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.736
mgf015583m Mimulus guttatus mgf015583m N 0.736
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.736
mgf014143m Mimulus guttatus mgf014143m N 0.736
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.736
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.736
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.736
PK02315.1 Cannabis sativa PK02315.1 N 0.736
ppa002483m Prunus persica ppa002483m N 0.736
ppa002588m Prunus persica ppa002588m N 0.736
29889.m003364 Ricinus communis 29889.m003364 N 0.736
SB07G024500 Sorghum bicolor Sb07g024500 N 0.736
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.736
MDP0000552419 Malus x domestica MDP0000552419 N 0.736
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.736
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.736
MDP0000306387 Malus x domestica MDP0000306387 N 0.736
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.736
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.736
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.736
LjSGA_044186.1 Lotus japonicus LjSGA_044186.1 N 0.728
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.725
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.725
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.725
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.725
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.725
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.725
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.725
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.725
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.725
mgf017987m Mimulus guttatus mgf017987m N 0.725
SB01G008170 Sorghum bicolor Sb01g008170 N 0.725
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.725
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.725
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.725
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.725
SB01G005500 Sorghum bicolor Sb01g005500 N 0.714
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.714
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.714
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.714
PK17832.1 Cannabis sativa PK17832.1 N 0.714
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.714
PK05579.1 Cannabis sativa PK05579.1 N 0.714
SB09G000580 Sorghum bicolor Sb09g000580 N 0.714
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.714
SB06G027960 Sorghum bicolor Sb06g027960 N 0.714
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.714
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.714
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.714
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.714
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.714
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.714
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.714
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.714
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.714
mgf009938m Mimulus guttatus mgf009938m N 0.714
mgf013853m Mimulus guttatus mgf013853m N 0.714
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.714
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.703
29929.m004643 Ricinus communis 29929.m004643 N 0.703
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.703
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.703
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.703
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.703
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.703
ppa002677m Prunus persica ppa002677m N 0.703
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.703