B9N770_POPTR (Populus trichocarpa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 POPTR_0022s00680 T62255_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0022s00680.1 YTH 392 482

Links

Other YTH family RBPs
Other Populus trichocarpa RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.934
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.879
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.879
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.879
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.879
MDP0000256033 Malus x domestica MDP0000256033 N 0.846
PK26094.1 Cannabis sativa PK26094.1 N 0.846
ppa003557m Prunus persica ppa003557m N 0.846
MDP0000488248 Malus x domestica MDP0000488248 N 0.835
29765.m000746 Ricinus communis 29765.m000746 N 0.835
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.824
mgf014829m Mimulus guttatus mgf014829m N 0.780
mgf001716m Mimulus guttatus mgf001716m N 0.780
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.758
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.758
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.758
mgf019846m Mimulus guttatus mgf019846m N 0.758
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.758
MDP0000171737 Malus x domestica MDP0000171737 N 0.747
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.747
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.739
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.736
ECT11 Arabidopsis thaliana AT1G09810-TAIR-G N 0.736
XM_002892481.1 Arabidopsis lyrata fgenesh2_kg.1__1037__AT1G09810.1 N 0.736
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.736
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.736
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.736
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.736
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.725
ppa018635m Prunus persica ppa018635m N 0.725
29955.m001158 Ricinus communis 29955.m001158 N 0.725
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.725
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.725
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.714
ppa003664m Prunus persica ppa003664m N 0.714
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.714
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.714
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.714
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.714
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.714
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.714
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.714
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.714
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.714
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.714
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.714
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.714
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.714
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.703
MDP0000132385 Malus x domestica MDP0000132385 N 0.703
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.703
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.703
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.703
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.703
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.703
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.703
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.703
SB09G000580 Sorghum bicolor Sb09g000580 N 0.703
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.703
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.703
MDP0000306387 Malus x domestica MDP0000306387 N 0.703
MDP0000286471 Malus x domestica MDP0000286471 N 0.703
MDP0000231231 Malus x domestica MDP0000231231 N 0.703
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.703