MDP0000488248 (Malus x domestica)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 MDP0000488248 T62543_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000488248 YTH 371 461

Links

Other YTH family RBPs
Other Malus x domestica RBPs

110 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000256033 Malus x domestica MDP0000256033 N 0.945
ppa003557m Prunus persica ppa003557m N 0.934
PK26094.1 Cannabis sativa PK26094.1 N 0.890
29765.m000746 Ricinus communis 29765.m000746 N 0.879
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.868
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.868
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.868
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.868
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.846
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.835
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.824
mgf001716m Mimulus guttatus mgf001716m N 0.824
mgf014829m Mimulus guttatus mgf014829m N 0.824
mgf019846m Mimulus guttatus mgf019846m N 0.802
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.802
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.802
MDP0000171737 Malus x domestica MDP0000171737 N 0.791
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.780
29955.m001158 Ricinus communis 29955.m001158 N 0.780
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.780
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.780
MDP0000286471 Malus x domestica MDP0000286471 N 0.769
MDP0000231231 Malus x domestica MDP0000231231 N 0.769
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.769
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.769
ppa003664m Prunus persica ppa003664m N 0.769
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.769
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.769
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.769
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.758
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.758
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.758
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.758
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.758
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.750
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.747
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.747
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.747
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.747
29889.m003364 Ricinus communis 29889.m003364 N 0.747
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.747
ppa018635m Prunus persica ppa018635m N 0.747
PK23104.1 Cannabis sativa PK23104.1 N 0.747
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.747
ECT11 Arabidopsis thaliana AT1G09810-TAIR-G N 0.747
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.747
XM_002892481.1 Arabidopsis lyrata fgenesh2_kg.1__1037__AT1G09810.1 N 0.747
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.736
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.736
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.736
mgf014143m Mimulus guttatus mgf014143m N 0.736
mgf015583m Mimulus guttatus mgf015583m N 0.736
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.736
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.736
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.736
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.736
MDP0000405927 Malus x domestica MDP0000405927 N 0.736
MDP0000248088 Malus x domestica MDP0000248088 N 0.736
MDP0000287088 Malus x domestica MDP0000287088 N 0.736
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.736
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.736
SB07G006330 Sorghum bicolor Sb07g006330 N 0.736
MDP0000552419 Malus x domestica MDP0000552419 N 0.736
PK02315.1 Cannabis sativa PK02315.1 N 0.736
MDP0000617859 Malus x domestica MDP0000617859 N 0.736
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.736
LjSGA_044186.1 Lotus japonicus LjSGA_044186.1 N 0.728
MDP0000306387 Malus x domestica MDP0000306387 N 0.725
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.725
MDP0000132385 Malus x domestica MDP0000132385 N 0.725
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.725
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.725
mgf017987m Mimulus guttatus mgf017987m N 0.725
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.725
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.725
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.725
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.725
SB03G031190 Sorghum bicolor Sb03g031190 N 0.725
ppa002588m Prunus persica ppa002588m N 0.714
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.714
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.714
SB09G000580 Sorghum bicolor Sb09g000580 N 0.714
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.714
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.714
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.714
ppa002483m Prunus persica ppa002483m N 0.714
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.714
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.714
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.714
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.714
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.714
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.703
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.703
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.703
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.703
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.703
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.703
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.703
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.703
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.703
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.703
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.703
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.703
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.703
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.703
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.703
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.703
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.703
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.703
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.703