GSVIVG00023248001 (Vitis vinifera)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 GSVIVG00023248001 T62216_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00023248001 YTH 510 600

Links

Other YTH family RBPs
Other Vitis vinifera RBPs

131 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.846
PK26094.1 Cannabis sativa PK26094.1 N 0.846
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.846
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.846
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.846
MDP0000256033 Malus x domestica MDP0000256033 N 0.835
mgf014829m Mimulus guttatus mgf014829m N 0.835
mgf001716m Mimulus guttatus mgf001716m N 0.835
MDP0000488248 Malus x domestica MDP0000488248 N 0.824
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.824
ppa003557m Prunus persica ppa003557m N 0.824
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.813
29765.m000746 Ricinus communis 29765.m000746 N 0.802
mgf019846m Mimulus guttatus mgf019846m N 0.802
MDP0000171737 Malus x domestica MDP0000171737 N 0.780
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.758
29955.m001158 Ricinus communis 29955.m001158 N 0.758
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.758
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.758
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.758
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.758
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.747
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.747
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.747
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.747
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.747
ppa018635m Prunus persica ppa018635m N 0.747
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.747
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.747
ppa003664m Prunus persica ppa003664m N 0.747
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.747
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.747
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.747
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.747
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.736
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.736
MDP0000286471 Malus x domestica MDP0000286471 N 0.736
MDP0000231231 Malus x domestica MDP0000231231 N 0.736
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.736
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.736
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.736
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.736
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.736
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.736
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.736
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.736
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.736
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.736
29889.m003364 Ricinus communis 29889.m003364 N 0.736
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.728
SB03G031190 Sorghum bicolor Sb03g031190 N 0.725
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.725
SB09G000580 Sorghum bicolor Sb09g000580 N 0.725
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.725
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.725
XM_002892481.1 Arabidopsis lyrata fgenesh2_kg.1__1037__AT1G09810.1 N 0.725
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.725
ECT11 Arabidopsis thaliana AT1G09810-TAIR-G N 0.725
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.725
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.725
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.725
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.725
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.725
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.714
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.714
PK02315.1 Cannabis sativa PK02315.1 N 0.714
MDP0000306387 Malus x domestica MDP0000306387 N 0.714
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.714
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.714
SB01G005500 Sorghum bicolor Sb01g005500 N 0.714
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.714
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.714
MDP0000132385 Malus x domestica MDP0000132385 N 0.714
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.714
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.714
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.714
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.714
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.714
mgf009938m Mimulus guttatus mgf009938m N 0.714
mgf013853m Mimulus guttatus mgf013853m N 0.714
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.714
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.714
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.714
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.714
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.714
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.714
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.714
SB06G027960 Sorghum bicolor Sb06g027960 N 0.714
PK23104.1 Cannabis sativa PK23104.1 N 0.714
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.714
PK17832.1 Cannabis sativa PK17832.1 N 0.703
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.703
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.703
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.703
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.703
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.703
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.703
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.703
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.703
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.703
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.703
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.703
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.703
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.703
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.703
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.703
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.703
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.703
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.703
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.703
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.703
mgf015583m Mimulus guttatus mgf015583m N 0.703
mgf014143m Mimulus guttatus mgf014143m N 0.703
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.703
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.703
29929.m004643 Ricinus communis 29929.m004643 N 0.703
mgf013935m Mimulus guttatus mgf013935m N 0.703
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.703
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.703
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.703
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.703
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.703
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.703
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.703
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.703
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.703
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.703
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.703
SB01G008170 Sorghum bicolor Sb01g008170 N 0.703
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.703
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.703