cassava13324.valid.m1 (Manihot esculenta)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 cassava13324.valid.m1 T62309_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava13324.valid.m1 YTH 287 377

Links

Other YTH family RBPs
Other Manihot esculenta RBPs

119 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava14932.m1 Manihot esculenta cassava14932.m1 N 1.000
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 1.000
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 1.000
MDP0000256033 Malus x domestica MDP0000256033 N 0.890
29765.m000746 Ricinus communis 29765.m000746 N 0.890
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.879
ppa003557m Prunus persica ppa003557m N 0.879
MDP0000488248 Malus x domestica MDP0000488248 N 0.868
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.868
mgf014829m Mimulus guttatus mgf014829m N 0.857
mgf001716m Mimulus guttatus mgf001716m N 0.857
PK26094.1 Cannabis sativa PK26094.1 N 0.846
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.846
mgf019846m Mimulus guttatus mgf019846m N 0.791
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.780
MDP0000171737 Malus x domestica MDP0000171737 N 0.780
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.780
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.772
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.769
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.769
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.769
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.769
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.769
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.769
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.769
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.758
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.758
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.758
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.758
29955.m001158 Ricinus communis 29955.m001158 N 0.758
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.758
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.758
LjSGA_044186.1 Lotus japonicus LjSGA_044186.1 N 0.750
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.747
ECT11 Arabidopsis thaliana AT1G09810-TAIR-G N 0.747
mgf014143m Mimulus guttatus mgf014143m N 0.747
mgf015583m Mimulus guttatus mgf015583m N 0.747
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.747
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.747
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.747
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.747
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.747
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.747
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.747
ppa003664m Prunus persica ppa003664m N 0.747
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.747
XM_002892481.1 Arabidopsis lyrata fgenesh2_kg.1__1037__AT1G09810.1 N 0.747
29889.m003364 Ricinus communis 29889.m003364 N 0.747
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.736
ppa018635m Prunus persica ppa018635m N 0.736
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.736
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.736
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.736
SB09G000580 Sorghum bicolor Sb09g000580 N 0.736
MDP0000286471 Malus x domestica MDP0000286471 N 0.736
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.736
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.736
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.736
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.736
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.736
mgf017987m Mimulus guttatus mgf017987m N 0.736
MDP0000231231 Malus x domestica MDP0000231231 N 0.736
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.736
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.736
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.725
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.725
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.725
SB07G006330 Sorghum bicolor Sb07g006330 N 0.725
SB03G031190 Sorghum bicolor Sb03g031190 N 0.725
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.725
ppa002588m Prunus persica ppa002588m N 0.725
MDP0000287088 Malus x domestica MDP0000287088 N 0.725
MDP0000306387 Malus x domestica MDP0000306387 N 0.725
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.725
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.725
MDP0000132385 Malus x domestica MDP0000132385 N 0.725
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.725
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.725
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.725
MDP0000405927 Malus x domestica MDP0000405927 N 0.725
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.725
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.725
ppa002483m Prunus persica ppa002483m N 0.725
MDP0000617859 Malus x domestica MDP0000617859 N 0.725
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.714
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.714
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.714
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.714
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.714
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.714
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.714
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.714
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.714
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.714
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.714
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.714
MDP0000552419 Malus x domestica MDP0000552419 N 0.714
PK02315.1 Cannabis sativa PK02315.1 N 0.714
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.714
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.714
PK23104.1 Cannabis sativa PK23104.1 N 0.714
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.714
MDP0000248088 Malus x domestica MDP0000248088 N 0.714
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.714
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.714
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.714
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.703
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.703
29929.m004643 Ricinus communis 29929.m004643 N 0.703
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.703
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.703
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.703
PK17832.1 Cannabis sativa PK17832.1 N 0.703
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.703
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.703
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.703
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.703
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.703
SB01G005500 Sorghum bicolor Sb01g005500 N 0.703