CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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yth2
(
Danio rerio
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
ENSDARG00000014498
T61994_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000031303
YTH
470
560
LLFSVNGSGHFCGVAEMRSPVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLDKARQVLKIIASY
Links
Other
YTH
family RBPs
Other
Danio rerio
RBPs
156 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
YTHDF2
Gasterosteus aculeatus
ENSGACG00000009603
N
0.978
YTHDF2
Takifugu rubripes
ENSTRUG00000011923
N
0.978
YTHDF2
Tetraodon nigroviridis
ENSTNIG00000017263
N
0.978
YTHDF2
Oryzias latipes
ENSORLG00000014323
N
0.978
YTHDF2
Tarsius syrichta
ENSTSYG00000004178
N
0.956
YTHDF2
Microcebus murinus
ENSMICG00000003729
N
0.956
XR_023164.1
Pan troglodytes
ENSPTRG00000000439
N
0.956
YTHDF2
Procavia capensis
ENSPCAG00000007587
N
0.956
YTHDF2
Myotis lucifugus
ENSMLUG00000012606
N
0.956
YTHDF2
Loxodonta africana
ENSLAFG00000030451
N
0.956
YTHDF2
Tursiops truncatus
ENSTTRG00000013603
N
0.956
Ame_R001131
Ailuropoda melanoleuca
Ame_R001131
N
0.956
YTHDF2
Macaca mulatta
ENSMMUG00000011391
N
0.956
YTHDF2
Oryctolagus cuniculus
ENSOCUG00000010612
N
0.956
YTHDF2
Otolemur garnettii
ENSOGAG00000014648
N
0.956
YTHDF2
Pteropus vampyrus
ENSPVAG00000017224
N
0.956
YTHDF2
Sorex araneus
ENSSARG00000001187
N
0.956
Ythdf2
Mus musculus
ENSMUSG00000040025
N
0.956
YTHDF2
Gorilla gorilla
ENSGGOG00000024069
N
0.956
YTHDF2
Monodelphis domestica
ENSMODG00000010973
N
0.956
YTHDF2
Ochotona princeps
ENSOPRG00000017111
N
0.956
YTHDF2
Macropus eugenii
ENSMEUG00000016488
N
0.956
YTHDF2
Felis catus
ENSFCAG00000012446
N
0.956
YTHDF2
Choloepus hoffmanni
ENSCHOG00000000357
N
0.956
YTHDF2
Homo sapiens
ENSG00000198492
N
0.956
YTHDF2
Callithrix jacchus
ENSCJAG00000009804
N
0.956
YTHDF2
Erinaceus europaeus
ENSEEUG00000011398
N
0.956
YTHDF2
Cavia porcellus
ENSCPOG00000019907
N
0.956
Ythdf2
Dipodomys ordii
ENSDORG00000016564
N
0.956
LOC100070667
Equus caballus
ENSECAG00000023108
N
0.956
YTHDF2
Canis familiaris
ENSCAFG00000011700
N
0.956
YTHDF2
Echinops telfairi
ENSETEG00000017614
N
0.956
YTHD2_BOVIN
Bos taurus
ENSBTAG00000015771
N
0.956
YTHDF2
Ornithorhynchus anatinus
ENSOANG00000006124
N
0.945
YTHDF2
Anolis carolinensis
ENSACAG00000010846
N
0.945
LOC419583
Gallus gallus
ENSGALG00000000959
N
0.945
YTHDF2
Meleagris gallopavo
ENSMGAG00000001610
N
0.945
AAH68959
Xenopus laevis
AAH68959
N
0.934
AAH78013
Xenopus laevis
AAH78013
N
0.934
ythdf2
Xenopus tropicalis
ENSXETG00000020636
N
0.934
YTHDF2
Taeniopygia guttata
ENSTGUG00000017347
N
0.934
YTHDF1
Otolemur garnettii
ENSOGAG00000000480
N
0.923
YTHDF1
Bos taurus
ENSBTAG00000010383
N
0.912
Ythdf1
Rattus norvegicus
ENSRNOG00000027015
N
0.901
LOC100060217
Equus caballus
ENSECAG00000019475
N
0.901
YTHDF1
Canis familiaris
ENSCAFG00000012772
N
0.901
YTHDF1
Procavia capensis
ENSPCAG00000002452
N
0.901
Ame_R014316
Ailuropoda melanoleuca
Ame_R014316
N
0.901
YTHDF1
Myotis lucifugus
ENSMLUG00000002241
N
0.901
YTHDF1
Loxodonta africana
ENSLAFG00000008884
N
0.901
YTHDF1
Erinaceus europaeus
ENSEEUG00000007461
N
0.901
YTHDF1
Tursiops truncatus
ENSTTRG00000001804
N
0.901
Ythdf1
Mus musculus
ENSMUSG00000038848
N
0.901
ENSTNIG00000003975
Tetraodon nigroviridis
ENSTNIG00000003975
N
0.890
ENSPPYG00000011226
Pongo pygmaeus
ENSPPYG00000011226
N
0.890
ENSTRUG00000005049
Takifugu rubripes
ENSTRUG00000005049
N
0.890
YTHDF1
Cavia porcellus
ENSCPOG00000010202
N
0.890
YTHDF1
Pan troglodytes
ENSPTRG00000013730
N
0.890
ENSTRUG00000004288
Takifugu rubripes
ENSTRUG00000004288
N
0.890
ythdf1
Danio rerio
ENSDARG00000016447
N
0.890
A6MKQ0_CALJA
Callithrix jacchus
ENSCJAG00000010056
N
0.890
YTHDF1
Pteropus vampyrus
ENSPVAG00000017568
N
0.890
YTHDF1
Taeniopygia guttata
ENSTGUG00000007565
N
0.890
ENSMGAG00000006139
Meleagris gallopavo
ENSMGAG00000006139
N
0.890
YTHDF1
Gorilla gorilla
ENSGGOG00000008340
N
0.890
ENSOANG00000003723
Ornithorhynchus anatinus
ENSOANG00000003723
N
0.890
ENSGACG00000012014
Gasterosteus aculeatus
ENSGACG00000012014
N
0.890
YTHDF1
Macaca mulatta
ENSMMUG00000009227
N
0.890
ENSGACG00000002613
Gasterosteus aculeatus
ENSGACG00000002613
N
0.890
Q5ZME7_CHICK
Gallus gallus
ENSGALG00000005745
N
0.890
YTHDF1
Homo sapiens
ENSG00000149658
N
0.890
Ythdf1
Dipodomys ordii
ENSDORG00000002879
N
0.890
ENSORLG00000014665
Oryzias latipes
ENSORLG00000014665
N
0.890
ENSORLG00000009739
Oryzias latipes
ENSORLG00000009739
N
0.890
YTHDF1
Ochotona princeps
ENSOPRG00000001758
N
0.879
ENSMODG00000016842
Monodelphis domestica
ENSMODG00000016842
N
0.879
ENSACAG00000005560
Anolis carolinensis
ENSACAG00000005560
N
0.879
ENSTRUG00000007870
Takifugu rubripes
ENSTRUG00000007870
N
0.879
ythdf1
Xenopus tropicalis
ENSXETG00000027086
N
0.868
ENSMODG00000008255
Monodelphis domestica
ENSMODG00000008255
N
0.868
ENSMEUG00000011285
Macropus eugenii
ENSMEUG00000011285
N
0.868
ENSMGAG00000011168
Meleagris gallopavo
ENSMGAG00000011168
N
0.868
ENSGACG00000002998
Gasterosteus aculeatus
ENSGACG00000002998
N
0.868
ENSACAG00000016837
Anolis carolinensis
ENSACAG00000016837
N
0.868
LOC776373
Gallus gallus
ENSGALG00000019473
N
0.868
AAH60445
Xenopus laevis
AAH60445
N
0.868
YTHDF3
Taeniopygia guttata
ENSTGUG00000011243
N
0.868
Q5ZLM1_CHICK
Gallus gallus
ENSGALG00000015505
N
0.868
YTHDF1
Oryctolagus cuniculus
ENSOCUG00000012780
N
0.868
ENSTNIG00000012698
Tetraodon nigroviridis
ENSTNIG00000012698
N
0.868
YTHDF3
Callithrix jacchus
ENSCJAG00000009217
N
0.857
ENSETEG00000007144
Echinops telfairi
ENSETEG00000007144
N
0.857
ENSCHOG00000010194
Choloepus hoffmanni
ENSCHOG00000010194
N
0.857
Ame_R018798
Ailuropoda melanoleuca
Ame_R018798
N
0.857
YTHDF3
Bos taurus
ENSBTAG00000018557
N
0.857
Ythdf3
Dipodomys ordii
ENSDORG00000014699
N
0.857
ENSCAFG00000007215
Canis familiaris
ENSCAFG00000007215
N
0.857
ENSPCAG00000016282
Procavia capensis
ENSPCAG00000016282
N
0.857
ENSGGOG00000027681
Gorilla gorilla
ENSGGOG00000027681
N
0.857
ENSG00000185728
Homo sapiens
ENSG00000185728
N
0.857
ENSVPAG00000008104
Vicugna pacos
ENSVPAG00000008104
N
0.857
ENSOANG00000005053
Ornithorhynchus anatinus
ENSOANG00000005053
N
0.857
ENSSARG00000007626
Sorex araneus
ENSSARG00000007626
N
0.857
ENSTBEG00000005747
Tupaia belangeri
ENSTBEG00000005747
N
0.857
Ythdf3
Mus musculus
ENSMUSG00000047213
N
0.857
ENSOCUG00000008723
Oryctolagus cuniculus
ENSOCUG00000008723
N
0.857
Ythdf3
Rattus norvegicus
ENSRNOG00000010084
N
0.857
ENSPPYG00000018626
Pongo pygmaeus
ENSPPYG00000018626
N
0.857
XR_024462.1
Pan troglodytes
ENSPTRG00000030993
N
0.857
ENSPVAG00000002740
Pteropus vampyrus
ENSPVAG00000002740
N
0.857
ENSCPOG00000002961
Cavia porcellus
ENSCPOG00000002961
N
0.857
ENSTNIG00000012490
Tetraodon nigroviridis
ENSTNIG00000012490
N
0.857
ENSMMUG00000006729
Macaca mulatta
ENSMMUG00000006729
N
0.857
ythdf3
Xenopus tropicalis
ENSXETG00000021659
N
0.857
ythdf3
Danio rerio
ENSDARG00000057939
N
0.857
ENSLAFG00000016052
Loxodonta africana
ENSLAFG00000016052
N
0.857
AAH81017
Xenopus laevis
AAH81017
N
0.857
ENSMICG00000009379
Microcebus murinus
ENSMICG00000009379
N
0.857
ENSTSYG00000009117
Tarsius syrichta
ENSTSYG00000009117
N
0.857
ENSTTRG00000014564
Tursiops truncatus
ENSTTRG00000014564
N
0.857
ENSORLG00000008640
Oryzias latipes
ENSORLG00000008640
N
0.846
ENSCSAVG00000010987
Ciona savignyi
ENSCSAVG00000010987
N
0.813
XP_001187433.1
Strongylocentrotus purpuratus
XP_001187433.1
N
0.813
XP_786921.2
Strongylocentrotus purpuratus
XP_786921.2
N
0.813
ENSCING00000004166
Ciona intestinalis
ENSCING00000004166
N
0.802
Aqu1.220420
Amphimedon queenslandica
Aqu1.220420
N
0.791
e_gw.462.3.1
Branchiostoma floridae
e_gw.462.3.1
N
0.791
DGIL_AUG5s6515g6t1
Acyrtosiphon pisum
DGIL_AUG5s6515g6t1
N
0.780
XP_002161951.1
Hydra magnipapillata
XP_002161951.1
N
0.769
XP_002156821.1
Hydra magnipapillata
XP_002156821.1
N
0.769
estExt_fgenesh1_pm.C_4090006
Capitella teleta
estExt_fgenesh1_pm.C_4090006
N
0.769
AGAP003817
Anopheles gambiae
AGAP003817
N
0.758
PHUM167190
Pediculus humanus
PHUM167190
N
0.758
62837
Helobdella robusta
62837
N
0.758
152141
Helobdella robusta
152141
N
0.747
BGIBMGA007551
Bombyx mori
BGIBMGA007551
N
0.747
CpipJ_CPIJ011115
Culex pipiens
CpipJ_CPIJ011115
N
0.747
amel4_ncbi_hmm12284
Tribolium castaneum
amel4_ncbi_hmm12284
N
0.747
amel4_ncbi_hmm12284
Apis mellifera
amel4_ncbi_hmm12284
N
0.747
CpipJ_CPIJ011116
Culex pipiens
CpipJ_CPIJ011116
N
0.747
nasonia_NCBI_hmm250744
Nasonia vitripennis
nasonia_NCBI_hmm250744
N
0.747
CPIJ011116
Culex quinquefasciatus
CPIJ011116
N
0.747
CPIJ011115
Culex quinquefasciatus
CPIJ011115
N
0.747
GD18245
Drosophila simulans
FBgn0189779
N
0.736
GM17761
Drosophila sechellia
FBgn0172669
N
0.736
CG6422
Drosophila melanogaster
FBgn0039261
N
0.736
e_gw.90.29.1
Nematostella vectensis
e_gw.90.29.1
N
0.736
AAEL005544
Aedes aegypti
AAEL005544
N
0.736
GL21952
Drosophila persimilis
FBgn0159545
N
0.725
GA19581-RA
Drosophila pseudoobscura
FBgn0079577
N
0.725
GF18592
Drosophila ananassae
FBgn0095610
N
0.714
GG12295
Drosophila erecta
FBgn0104586
N
0.714
GE10748
Drosophila yakuba
FBgn0228591
N
0.714
GK12904
Drosophila willistoni
FBgn0214913
N
0.714
PGTG_07186
Puccinia graminis
PGTG_07186
N
0.707
Sjc_0086280
Schistosoma japonicum
Sjc_0086280
N
0.703