sfpq (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSGACG00000002034 T080632_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
sfpq
M11629_2.00		 Gasterosteus aculeatus NGURGKKU JPLE
Sasse et al.(2025)
RM_Gas.acu_ENSGACG00000002034 		0.018

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.826
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.826
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.826
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.826
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.018
(88.88%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000002643 RRM 255 332
ENSGACP00000002643 RRM 329 399
ENSGACP00000002654 RRM 246 323
ENSGACP00000002654 RRM 320 390
ENSGACP00000002658 RRM 214 291
ENSGACP00000002658 RRM 288 358

RNA contacting residues

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

136 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ACYPI003668 Acyrthosiphon pisum ACYPI003668 I 0.000
ENSAMEG00000012247 Ailuropoda melanoleuca ENSAMEG00000012247 I 0.000
ENSAMEG00000016500 Ailuropoda melanoleuca ENSAMEG00000016500 I 0.000
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.832
Alligator_sinensis_CCG000621.1 Alligator sinensis Alligator_sinensis_CCG000621.1 I 0.000
Aqu1.229782 Amphimedon queenslandica Aqu1.229782 I 0.000
ENSAPLG00000012904 Anas platyrhynchos ENSAPLG00000012904 I 0.000
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.839
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.000
ACUA006315 Anopheles culicifacies ACUA006315 I 0.000
AFAF015084 Anopheles farauti AFAF015084 I 0.000
AMIN008807 Anopheles minimus AMIN008807 I 0.000
GB54653 Apis mellifera GB54653 I 0.000
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.839
Afo_R011397 Aptenodytes forsteri Afo_R011397 I 0.000
ALUE_0001152201 Ascaris lumbricoides ALUE_0001152201 I 0.000
ENSAMXG00000008333 Astyanax mexicanus ENSAMXG00000008333 I 0.000
ENSAMXG00000000446 Astyanax mexicanus ENSAMXG00000000446 I 0.000
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.866
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.000
ENSBTAP00000039319-D1 Bos grunniens ENSBTAP00000039319-D1 I 0.000
ENSBTAP00000011963-D1 Bos grunniens ENSBTAP00000011963-D1 I 0.000
SNRPB2 Bos taurus ENSBTAG00000027506 I 0.000
SNRPA Bos taurus ENSBTAG00000009077 I 0.000
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.000
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.000
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.772
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.839
Brh_R011559 Buceros rhinoceros Brh_R011559 I 0.000
ENSCJAG00000004811 Callithrix jacchus ENSCJAG00000004811 I 0.000
ENSCJAG00000023308 Callithrix jacchus ENSCJAG00000023308 I 0.000
ENSCJAG00000022477 Callithrix jacchus ENSCJAG00000022477 I 0.000
ENSCJAG00000021962 Callithrix jacchus ENSCJAG00000021962 I 0.000
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.000
Aan_R011405 Calypte anna Aan_R011405 I 0.000
Aan_R015520 Calypte anna Aan_R015520 I 0.839
ENSCAFG00000024887 Canis familiaris ENSCAFG00000024887 I 0.000
ENSCAFG00000005520 Canis familiaris ENSCAFG00000005520 I 0.000
CapteG179768 Capitella teleta CapteG179768 I 0.000
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.000
ENSCPOG00000005014 Cavia porcellus ENSCPOG00000005014 I 0.000
Cmyd_10001249 Chelonia mydas Cmyd_10001249 I 0.000
ENSCSAG00000011677 Chlorocebus sabaeus ENSCSAG00000011677 I 0.000
ENSCSAG00000003646 Chlorocebus sabaeus ENSCSAG00000003646 I 0.000
CLEC000567 Cimex lectularius CLEC000567 I 0.000
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.000
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.000
CGI_10018990 Crassostrea gigas CGI_10018990 I 0.000
KGM_06395 Danaus plexippus KGM_06395 I 0.000
snrpb2 Danio rerio ENSDARG00000039424 I 0.000
snrpa Danio rerio ENSDARG00000018890 I 0.000
DAPPUDRAFT_299752 Daphnia pulex DAPPUDRAFT_299752 I 0.000
ENSDNOG00000047384 Dasypus novemcinctus ENSDNOG00000047384 I 0.000
ENSDNOG00000014137 Dasypus novemcinctus ENSDNOG00000014137 I 0.000
YQE_08260 Dendroctonus ponderosae YQE_08260 I 0.000
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.000
GF21334 Drosophila ananassae FBgn0098336 I 0.000
snf Drosophila melanogaster FBgn0003449 D 0.000
GL14287 Drosophila persimilis FBgn0151892 I 0.000
GA18235 Drosophila pseudoobscura FBgn0078242 I 0.000
GK25839 Drosophila willistoni FBgn0227798 I 0.000
GE16390 Drosophila yakuba FBgn0233919 I 0.000
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.000
SNRPA Echinops telfairi ENSETEG00000019205 I 0.000
SNRPA Equus caballus ENSECAG00000013141 I 0.000
SNRPB2 Equus caballus ENSECAG00000018407 I 0.000
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.000
SNRPA Felis catus ENSFCAG00000016209 I 0.000
SNRPB2 Felis catus ENSFCAG00000026115 I 0.000
ENSFALG00000013668 Ficedula albicollis ENSFALG00000013668 I 0.000
ENSFALG00000000743 Ficedula albicollis ENSFALG00000000743 I 0.000
ENSGMOG00000011957 Gadus morhua ENSGMOG00000011957 I 0.882
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.913
ENSGMOG00000005324 Gadus morhua ENSGMOG00000005324 I 0.000
ENSGMOG00000010128 Gadus morhua ENSGMOG00000010128 I 0.000
SFPQ Gallus gallus ENSGALG00000002514 I 0.826
SNRPB2 Gallus gallus ENSGALG00000026999 I 0.000
snrpa Gasterosteus aculeatus ENSGACG00000009838 I 0.000
snrpb2 Gasterosteus aculeatus ENSGACG00000019682 I 0.000
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.839
Gfo_R002730 Geospiza fortis Gfo_R002730 I 0.000
Gfo_R001723 Geospiza fortis Gfo_R001723 I 0.000
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.000
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.826
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.000
HHAL007017-PA Halyomorpha halys HHAL007017-PA I 0.000
Hsal_01200--XP_001606482.1_NASVI Harpegnathos saltator Hsal_01200--XP_001606482.1_NASVI I 0.000
HMEL013385 Heliconius melpomene HMEL013385 I 0.000
HelroG186191 Helobdella robusta HelroG186191 I 0.000
HelroG105398 Helobdella robusta HelroG105398 I 0.000
SNRPA Homo sapiens ENSG00000077312 D 0.000
SNRPB2 Homo sapiens ENSG00000125870 D 0.000
ENSSTOG00000009198 Ictidomys tridecemlineatus ENSSTOG00000009198 I 0.000
ENSSTOG00000021474 Ictidomys tridecemlineatus ENSSTOG00000021474 I 0.000
ENSLACG00000007386 Latimeria chalumnae ENSLACG00000007386 I 0.000
ENSLACG00000017723 Latimeria chalumnae ENSLACG00000017723 I 0.000
ENSLOCG00000015992 Lepisosteus oculatus ENSLOCG00000015992 I 0.000
ENSLOCG00000014661 Lepisosteus oculatus ENSLOCG00000014661 I 0.000
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.879
LDEC003039 Leptinotarsa decemlineata LDEC003039 I 0.000
LotgiG121828 Lottia gigantea LotgiG121828 I 0.000
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.000
SNRPA Loxodonta africana ENSLAFG00000026568 I 0.000
LCUP002613 Lucilia cuprina LCUP002613 I 0.000
ENSP00000246071 Macaca fascicularis ENSP00000246071 I 0.000
ENSP00000243563 Macaca fascicularis ENSP00000243563 I 0.000
ENSMMUG00000014493 Macaca mulatta ENSMMUG00000014493 I 0.000
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.000
ENSMEUG00000002434 Macropus eugenii ENSMEUG00000002434 I 0.000
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.832
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 D 0.000
MCINX002606 Melitaea cinxia MCINX002606 I 0.000
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.000
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.000
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.000
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.832
Gm5145 Mus musculus ENSMUSG00000071273 I 0.000
Snrpa Mus musculus ENSMUSG00000061479 I 0.000
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.000
ENSMPUG00000017681 Mustela putorius furo ENSMPUG00000017681 I 0.000
ENSMPUG00000020173 Mustela putorius furo ENSMPUG00000020173 I 0.000
ENSMPUG00000018871 Mustela putorius furo ENSMPUG00000018871 I 0.000
ENSMPUG00000001392 Mustela putorius furo ENSMPUG00000001392 I 0.000
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.832
Myotis_brandtii_SNRPA_10035737 Myotis brandtii Myotis_brandtii_SNRPA_10035737 I 0.000
Myotis_brandtii_SNRPB2_10029071 Myotis brandtii Myotis_brandtii_SNRPB2_10029071 I 0.000
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.000
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.000
NV13607 Nasonia vitripennis NV13607 I 0.000
NEMVEDRAFT_v1g85286 Nematostella vectensis NEMVEDRAFT_v1g85286 I 0.000
ENSNLEG00000009623 Nomascus leucogenys ENSNLEG00000009623 I 0.000
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.000
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.000
Ocbimv22026579m.g Octopus bimaculoides Ocbimv22026579m.g I 0.000
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.772
Ogr03591 Ophisaurus gracilis Ogr03591 I 0.000
ENSONIG00000003761 Oreochromis niloticus ENSONIG00000003761 I 0.000
ENSONIG00000017737 Oreochromis niloticus ENSONIG00000017737 I 0.861
ENSONIG00000006786 Oreochromis niloticus ENSONIG00000006786 I 0.000
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.000
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.000
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.000
snrpa Oryzias latipes ENSORLG00000006536 I 0.000
sfpq Oryzias latipes ENSORLG00000007459 I 0.901
snrpb2 Oryzias latipes ENSORLG00000019421 I 0.000
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.000
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.000
ENSOARG00000012223 Ovis aries ENSOARG00000012223 I 0.000
ENSOARG00000006963 Ovis aries ENSOARG00000006963 I 0.000
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.000
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.000
ENSPANG00000004881 Papio anubis ENSPANG00000004881 I 0.000
ENSPANG00000023874 Papio anubis ENSPANG00000023874 I 0.000
ENSPSIG00000014724 Pelodiscus sinensis ENSPSIG00000014724 I 0.000
ENSPSIG00000015257 Pelodiscus sinensis ENSPSIG00000015257 I 0.000
ENSPFOG00000010881 Poecilia formosa ENSPFOG00000010881 I 0.000
ENSPFOG00000011001 Poecilia formosa ENSPFOG00000011001 I 0.000
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.872
Pvit_14761 Pogona vitticeps Pvit_14761 I 0.000
Pvit_16970 Pogona vitticeps Pvit_16970 I 0.000
ENSPPYG00000010723 Pongo abelii ENSPPYG00000010723 I 0.000
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.000
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.000
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.000
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.000
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.000
RPRC007750 Rhodnius prolixus RPRC007750 I 0.000
nRc.2.0.1.g25446 Romanomermis culicivorax nRc.2.0.1.g25446 I 0.000
Sakowv30046045m.g Saccoglossus kowalevskii Sakowv30046045m.g I 0.000
ENSSHAG00000003706 Sarcophilus harrisii ENSSHAG00000003706 I 0.000
ENSSHAG00000014957 Sarcophilus harrisii ENSSHAG00000014957 I 0.000
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.832
SBAD_0000968901 Soboliphyme baturini SBAD_0000968901 I 0.000
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.000
SMAR002759 Strigamia maritima SMAR002759 I 0.000
SMAR008467 Strigamia maritima SMAR008467 I 0.000
SNRPA Sus scrofa ENSSSCG00000002998 I 0.000
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.839
ENSTGUG00000002415 Taeniopygia guttata ENSTGUG00000002415 I 0.000
snrpb2 Takifugu rubripes ENSTRUG00000009060 I 0.000
snrpa Takifugu rubripes ENSTRUG00000009703 I 0.000
ENSTSYG00000008857 Tarsius syrichta ENSTSYG00000008857 I 0.000
snrpb2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.000
snrpa Tetraodon nigroviridis ENSTNIG00000007732 I 0.000
TC003016 Tribolium castaneum TC003016 I 0.000
D917_06617 Trichinella nativa D917_06617 I 0.000
EFV50450 Trichinella spiralis EFV50450 I 0.000
TriadG18899 Trichoplax adhaerens TriadG18899 I 0.000
TMUE_s0058001900 Trichuris muris TMUE_s0058001900 I 0.000
D918_05411 Trichuris suis D918_05411 I 0.000
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.000
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.000
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.000
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.000
Tal_R008228 Tyto alba Tal_R008228 I 0.000
Tal_R009770 Tyto alba Tal_R009770 I 0.839
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.000
snrpa.S Xenopus laevis XB-GENE-6254943 I 0.000
snrpb2.L Xenopus laevis XB-GENE-1010464 I 0.000
AAH72799 Xenopus laevis AAH72799 I 0.000
snrpa Xenopus tropicalis XB-GENE-494246 I 0.000
snrpb2 Xenopus tropicalis XB-GENE-1010457 I 0.000
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.872
ENSXMAG00000018580 Xiphophorus maculatus ENSXMAG00000018580 I 0.000
L798_13546 Zootermopsis nevadensis L798_13546 I 0.000