ENSPFOG00000003127 (Poecilia formosa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSPFOG00000003127 T085760_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
ENSPFOG00000003127
M22210_2.00		 Poecilia formosa NGURGUKK JPLE
Sasse et al.(2025)
RM_Poe.for_ENSPFOG00000003127 		0.048

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.804
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.804
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.804
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.804
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.048
(94.18%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPFOP00000003075 RRM 343 420
ENSPFOP00000003075 RRM 417 486
ENSPFOP00000030269 RRM 190 267
ENSPFOP00000030269 RRM 264 333
ENSPFOP00000030946 RRM 343 420
ENSPFOP00000030946 RRM 417 486

RNA contacting residues

Links

Other RRM family RBPs
Other Poecilia formosa RBPs

120 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.980
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.885
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.882
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.872
ENSONIG00000017737 Oreochromis niloticus ENSONIG00000017737 I 0.854
sfpq Oryzias latipes ENSORLG00000007459 I 0.854
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.853
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.845
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.824
ENSGMOG00000011957 Gadus morhua ENSGMOG00000011957 I 0.822
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.811
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.804
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.804
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.804
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.804
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.804
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.804
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.804
Aan_R015520 Calypte anna Aan_R015520 I 0.804
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.804
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.804
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.804
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.804
Tal_R009770 Tyto alba Tal_R009770 I 0.804
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.804
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.804
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.804
SFPQ Bos taurus ENSBTAG00000016328 I 0.804
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.804
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.804
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.804
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.804
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.804
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.804
SFPQ Echinops telfairi ENSETEG00000001095 I 0.804
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.804
SFPQ Homo sapiens ENSG00000116560 D 0.804
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.804
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.804
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.804
Sfpq Mus musculus ENSMUSG00000028820 I 0.804
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.804
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.804
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.804
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.804
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.804
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.804
SFPQ Procavia capensis ENSPCAG00000006164 I 0.804
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.799
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.797
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.797
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.797
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.797
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.797
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.797
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.791
SFPQ Gallus gallus ENSGALG00000002514 I 0.791
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.791
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.777
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.777
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.777
sfpq Danio rerio ENSDARG00000011564 I 0.769
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.764
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.757
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.738
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.736
Aan_R001274 Calypte anna Aan_R001274 I 0.736
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.736
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.736
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.736
Tal_R009732 Tyto alba Tal_R009732 I 0.736
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.736
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.736
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.736
PSPC1 Gallus gallus ENSGALG00000017142 I 0.736
ENSPMAG00000005583 Petromyzon marinus ENSPMAG00000005583 I 0.730
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.730
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.730
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.723
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.723
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.723
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.723
PSPC1 Bos taurus ENSBTAG00000003934 I 0.723
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.723
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.723
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.723
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.716
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.716
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.716
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.716
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.716
PSPC1 Sorex araneus ENSSARG00000000888 I 0.716
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.716
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.716
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.716
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.716
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.716
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.716
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.716
PSPC1 Felis catus ENSFCAG00000027841 I 0.716
PSPC1 Homo sapiens ENSG00000121390 I 0.716
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.716
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.716
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.716
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.716
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.716
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.716
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.716
Pspc1 Mus musculus ENSMUSG00000021938 I 0.716
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.716
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.716
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.716
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.716
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.709
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.709
nono Xenopus tropicalis XB-GENE-1002494 I 0.703
nono.L Xenopus laevis XB-GENE-1002501 I 0.703
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.703
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.703