ENSXMAG00000016391 (Xiphophorus maculatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSXMAG00000016391 T089223_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
ENSXMAG00000016391
M29235_2.00		 Xiphophorus maculatus NGURGUKK JPLE
Sasse et al.(2025)
RM_Xip.mac_ENSXMAG00000016391 		0.046

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.811
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.811
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.811
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.811
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.046
(90.79%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000016425 RRM 301 378
ENSXMAP00000016425 RRM 375 444

RNA contacting residues

Links

Other RRM family RBPs
Other Xiphophorus maculatus RBPs

119 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.980
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.885
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.882
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.872
ENSONIG00000017737 Oreochromis niloticus ENSONIG00000017737 I 0.854
sfpq Oryzias latipes ENSORLG00000007459 I 0.854
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.853
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.851
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.831
ENSGMOG00000011957 Gadus morhua ENSGMOG00000011957 I 0.822
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.818
Aan_R015520 Calypte anna Aan_R015520 I 0.811
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.811
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.811
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.811
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.811
Tal_R009770 Tyto alba Tal_R009770 I 0.811
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.811
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.811
SFPQ Bos taurus ENSBTAG00000016328 I 0.811
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.811
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.811
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.811
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.811
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.811
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.811
SFPQ Echinops telfairi ENSETEG00000001095 I 0.811
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.811
SFPQ Homo sapiens ENSG00000116560 D 0.811
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.811
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.811
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.811
Sfpq Mus musculus ENSMUSG00000028820 I 0.811
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.811
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.811
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.811
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.811
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.811
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.811
SFPQ Procavia capensis ENSPCAG00000006164 I 0.811
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.811
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.811
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.811
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.811
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.811
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.811
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.811
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.804
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.804
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.804
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.804
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.804
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.804
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.804
SFPQ Gallus gallus ENSGALG00000002514 I 0.797
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.797
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.797
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.792
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.784
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.784
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.784
sfpq Danio rerio ENSDARG00000011564 I 0.781
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.770
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.764
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.738
Aan_R001274 Calypte anna Aan_R001274 I 0.736
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.736
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.736
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.736
Tal_R009732 Tyto alba Tal_R009732 I 0.736
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.736
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.736
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.736
PSPC1 Gallus gallus ENSGALG00000017142 I 0.736
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.736
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.736
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.730
ENSPMAG00000005583 Petromyzon marinus ENSPMAG00000005583 I 0.730
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.723
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.723
PSPC1 Bos taurus ENSBTAG00000003934 I 0.723
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.723
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.723
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.723
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.723
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.723
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.716
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.716
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.716
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.716
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.716
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.716
PSPC1 Felis catus ENSFCAG00000027841 I 0.716
PSPC1 Homo sapiens ENSG00000121390 I 0.716
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.716
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.716
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.716
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.716
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.716
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.716
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.716
Pspc1 Mus musculus ENSMUSG00000021938 I 0.716
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.716
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.716
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.716
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.716
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.716
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.716
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.716
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.716
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.716
PSPC1 Sorex araneus ENSSARG00000000888 I 0.716
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.716
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.716
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.709
nono Xenopus tropicalis XB-GENE-1002494 I 0.703
nono.L Xenopus laevis XB-GENE-1002501 I 0.703
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.703
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.703