sfpq (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSORLG00000007459 T085208_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
sfpq
M19681_2.00		 Oryzias latipes NGURGUKK JPLE
Sasse et al.(2025)
RM_Ory.lat_ENSORLG00000007459 		0.021

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.795
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.795
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.795
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.795
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.021
(91.75%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000009351 RRM 290 367
ENSORLP00000009351 RRM 364 436
ENSORLP00000009352 RRM 313 390
ENSORLP00000009352 RRM 387 459

RNA contacting residues

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

119 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.908
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.901
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.887
ENSGMOG00000011957 Gadus morhua ENSGMOG00000011957 I 0.882
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.881
ENSONIG00000017737 Oreochromis niloticus ENSONIG00000017737 I 0.861
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.854
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.854
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.834
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.834
sfpq Danio rerio ENSDARG00000011564 I 0.812
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.808
Aan_R015520 Calypte anna Aan_R015520 I 0.808
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.808
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.808
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.808
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.808
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.808
Tal_R009770 Tyto alba Tal_R009770 I 0.808
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.808
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.801
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.801
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.801
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.801
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.801
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.801
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.795
SFPQ Procavia capensis ENSPCAG00000006164 I 0.795
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.795
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.795
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.795
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.795
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.795
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.795
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.795
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.795
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.795
SFPQ Bos taurus ENSBTAG00000016328 I 0.795
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.795
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.795
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.795
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.795
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.795
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.795
SFPQ Echinops telfairi ENSETEG00000001095 I 0.795
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.795
SFPQ Homo sapiens ENSG00000116560 D 0.795
SFPQ Gallus gallus ENSGALG00000002514 I 0.795
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.795
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.795
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.795
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.795
Sfpq Mus musculus ENSMUSG00000028820 I 0.795
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.795
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.795
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.795
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.795
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.795
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.788
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.788
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.768
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.768
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.762
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.755
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.755
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.748
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.748
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.735
Aan_R001274 Calypte anna Aan_R001274 I 0.735
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.735
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.735
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.735
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.735
Tal_R009732 Tyto alba Tal_R009732 I 0.735
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.735
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.735
PSPC1 Gallus gallus ENSGALG00000017142 I 0.735
ENSPMAG00000005583 Petromyzon marinus ENSPMAG00000005583 I 0.728
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.722
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.722
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.715
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.715
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.715
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.715
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.715
PSPC1 Sorex araneus ENSSARG00000000888 I 0.715
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.715
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.715
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.715
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.715
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.715
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.715
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.715
PSPC1 Felis catus ENSFCAG00000027841 I 0.715
PSPC1 Homo sapiens ENSG00000121390 I 0.715
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.715
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.715
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.715
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.715
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.715
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.715
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.715
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.715
Pspc1 Mus musculus ENSMUSG00000021938 I 0.715
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.715
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.715
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.715
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.709
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.709
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.709
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.709
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.709
PSPC1 Bos taurus ENSBTAG00000003934 I 0.709
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.709
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.709
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.709
pspc1 Danio rerio ENSDARG00000006621 I 0.702
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.702