sfpq (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSGACG00000002034 T080632_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
sfpq
M11629_2.00		 Gasterosteus aculeatus NGURGKKU JPLE
Sasse et al.(2025)
RM_Gas.acu_ENSGACG00000002034 		0.018

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.826
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.826
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.826
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.826
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.018
(88.88%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000002643 RRM 255 332
ENSGACP00000002643 RRM 329 399
ENSGACP00000002654 RRM 246 323
ENSGACP00000002654 RRM 320 390
ENSGACP00000002658 RRM 214 291
ENSGACP00000002658 RRM 288 358

RNA contacting residues

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

136 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.933
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.928
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.913
sfpq Oryzias latipes ENSORLG00000007459 I 0.901
ENSGMOG00000011957 Gadus morhua ENSGMOG00000011957 I 0.882
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.879
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.872
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.872
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.866
ENSONIG00000017737 Oreochromis niloticus ENSONIG00000017737 I 0.861
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.839
Aan_R015520 Calypte anna Aan_R015520 I 0.839
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.839
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.839
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.839
Tal_R009770 Tyto alba Tal_R009770 I 0.839
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.839
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.832
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.832
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.832
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.832
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.832
SFPQ Gallus gallus ENSGALG00000002514 I 0.826
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.826
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.826
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.826
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.826
Sfpq Mus musculus ENSMUSG00000028820 I 0.826
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.826
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.826
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.826
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.826
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.826
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.826
SFPQ Procavia capensis ENSPCAG00000006164 I 0.826
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.826
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.826
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.826
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.826
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.826
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.826
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.826
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.826
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.826
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.826
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.826
SFPQ Bos taurus ENSBTAG00000016328 I 0.826
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.826
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.826
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.826
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.826
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.826
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.826
SFPQ Echinops telfairi ENSETEG00000001095 I 0.826
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.826
SFPQ Homo sapiens ENSG00000116560 D 0.826
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.819
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.819
sfpq Danio rerio ENSDARG00000011564 I 0.819
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.805
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.799
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.799
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.792
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.785
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.779
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.779
PSPC1 Gallus gallus ENSGALG00000017142 I 0.772
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.772
Aan_R001274 Calypte anna Aan_R001274 I 0.772
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.772
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.772
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.772
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.772
Tal_R009732 Tyto alba Tal_R009732 I 0.772
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.772
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.772
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.772
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.752
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.752
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.752
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.752
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.752
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.752
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.752
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.752
Pspc1 Mus musculus ENSMUSG00000021938 I 0.752
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.752
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.752
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.752
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.752
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.752
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.752
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.752
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.752
PSPC1 Sorex araneus ENSSARG00000000888 I 0.752
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.752
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.752
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.752
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.752
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.752
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.752
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.752
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.752
PSPC1 Felis catus ENSFCAG00000027841 I 0.752
PSPC1 Homo sapiens ENSG00000121390 I 0.752
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.745
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.745
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.745
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.745
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.745
PSPC1 Bos taurus ENSBTAG00000003934 I 0.745
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.745
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.745
ENSPMAG00000005583 Petromyzon marinus ENSPMAG00000005583 I 0.738
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.732
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.725
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.725
nono Xenopus tropicalis XB-GENE-1002494 I 0.725
ENSAMXG00000006846 Astyanax mexicanus ENSAMXG00000006846 I 0.725
pspc1 Danio rerio ENSDARG00000006621 I 0.725
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.720
nono Oryzias latipes ENSORLG00000012801 I 0.718
nono Takifugu rubripes ENSTRUG00000005554 I 0.718
nono.L Xenopus laevis XB-GENE-1002501 I 0.718
ENSONIG00000020497 Oreochromis niloticus ENSONIG00000020497 I 0.717
ENSPFOG00000003362 Poecilia formosa ENSPFOG00000003362 I 0.711
ENSXMAG00000007929 Xiphophorus maculatus ENSXMAG00000007929 I 0.711
nono Gasterosteus aculeatus ENSGACG00000011824 I 0.705
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.705
ENSPFOG00000016436 Poecilia formosa ENSPFOG00000016436 I 0.705
ENSXMAG00000019883 Xiphophorus maculatus ENSXMAG00000019883 I 0.705
nono Danio rerio ENSDARG00000020482 I 0.705
ENSPSIG00000010678 Pelodiscus sinensis ENSPSIG00000010678 I 0.700
Alligator_sinensis_CCG000628.3 Alligator sinensis Alligator_sinensis_CCG000628.3 I 0.700
Cmyd_10013139 Chelonia mydas Cmyd_10013139 I 0.700