ENSAMXG00000011538 (Astyanax mexicanus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSAMXG00000011538 T077011_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
ENSAMXG00000011538
M03652_2.00		 Astyanax mexicanus NGURGKKK JPLE
Sasse et al.(2025)
RM_Ast.mex_ENSAMXG00000011538 		0.020

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.830
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.830
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.830
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.830
NONO
M00507_2.00 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
0.703
NONO
M00505_2.00 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
0.703
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.020
(90.16%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSAMXP00000011854 RRM 250 327
ENSAMXP00000011854 RRM 324 392

RNA contacting residues

Links

Other RRM family RBPs
Other Astyanax mexicanus RBPs

182 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.905
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.884
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.875
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.866
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.853
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.851
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.845
sfpq Danio rerio ENSDARG00000011564 I 0.844
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.844
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.837
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.837
sfpq Oryzias latipes ENSORLG00000007459 I 0.834
SFPQ Bos taurus ENSBTAG00000016328 I 0.830
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.830
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.830
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.830
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.830
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.830
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.830
SFPQ Echinops telfairi ENSETEG00000001095 I 0.830
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.830
SFPQ Homo sapiens ENSG00000116560 D 0.830
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.830
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.830
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.830
Sfpq Mus musculus ENSMUSG00000028820 I 0.830
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.830
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.830
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.830
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.830
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.830
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.830
SFPQ Procavia capensis ENSPCAG00000006164 I 0.830
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.830
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.830
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.830
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.830
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.830
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.830
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.830
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.830
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.830
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.830
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.823
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.823
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.823
Aan_R015520 Calypte anna Aan_R015520 I 0.823
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.823
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.823
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.823
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.823
Tal_R009770 Tyto alba Tal_R009770 I 0.823
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.823
ENSGMOG00000011957 Gadus morhua ENSGMOG00000011957 I 0.822
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.819
ENSONIG00000017737 Oreochromis niloticus ENSONIG00000017737 I 0.816
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.816
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.816
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.816
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.810
SFPQ Gallus gallus ENSGALG00000002514 I 0.810
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.803
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.789
ENSPMAG00000005583 Petromyzon marinus ENSPMAG00000005583 I 0.782
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.776
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.762
PSPC1 Gallus gallus ENSGALG00000017142 I 0.762
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.762
Aan_R001274 Calypte anna Aan_R001274 I 0.762
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.762
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.762
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.762
Tal_R009732 Tyto alba Tal_R009732 I 0.762
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.762
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.762
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.755
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.755
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.755
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.748
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.748
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.748
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.745
PSPC1 Bos taurus ENSBTAG00000003934 I 0.741
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.741
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.741
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.741
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.741
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.741
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.741
PSPC1 Felis catus ENSFCAG00000027841 I 0.741
PSPC1 Homo sapiens ENSG00000121390 I 0.741
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.741
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.741
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.741
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.741
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.741
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.741
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.741
Pspc1 Mus musculus ENSMUSG00000021938 I 0.741
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.741
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.741
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.741
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.741
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.741
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.741
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.741
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.741
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.741
PSPC1 Sorex araneus ENSSARG00000000888 I 0.741
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.741
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.741
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.741
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.741
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.741
nono.L Xenopus laevis XB-GENE-1002501 I 0.741
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.741
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.735
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.735
ENSAPLG00000002642 Anas platyrhynchos ENSAPLG00000002642 I 0.730
ENSFALG00000011765 Ficedula albicollis ENSFALG00000011765 I 0.730
NONO Gallus gallus ENSGALG00000005507 I 0.730
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.730
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.730
Afo_R007329 Aptenodytes forsteri Afo_R007329 I 0.730
Brh_R000687 Buceros rhinoceros Brh_R000687 I 0.730
Tal_R004102 Tyto alba Tal_R004102 I 0.730
nono Xenopus tropicalis XB-GENE-1002494 I 0.730
pspc1 Danio rerio ENSDARG00000006621 I 0.728
ENSXMAG00000019883 Xiphophorus maculatus ENSXMAG00000019883 I 0.728
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.723
ENSPSIG00000010678 Pelodiscus sinensis ENSPSIG00000010678 I 0.723
Aan_R015248 Calypte anna Aan_R015248 I 0.723
Alligator_sinensis_CCG000628.3 Alligator sinensis Alligator_sinensis_CCG000628.3 I 0.723
Cmyd_10013139 Chelonia mydas Cmyd_10013139 I 0.723
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.721
ENSAMXG00000006846 Astyanax mexicanus ENSAMXG00000006846 I 0.721
ENSPFOG00000016436 Poecilia formosa ENSPFOG00000016436 I 0.716
Ogr12033 Ophisaurus gracilis Ogr12033 I 0.716
Pvit_05344 Pogona vitticeps Pvit_05344 I 0.716
ENSMEUG00000004294 Macropus eugenii ENSMEUG00000004294 I 0.709
NONO Monodelphis domestica ENSMODG00000004445 I 0.709
ENSSHAG00000010195 Sarcophilus harrisii ENSSHAG00000010195 I 0.709
NONO Anolis carolinensis ENSACAG00000015026 I 0.709
ENSLACG00000000598 Latimeria chalumnae ENSLACG00000000598 I 0.707
NONO Bos taurus ENSBTAG00000012152 I 0.703
ENSCAFG00000003207 Canis familiaris ENSCAFG00000003207 I 0.703
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.703
ENSCJAG00000036744 Callithrix jacchus ENSCJAG00000036744 I 0.703
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.703
ENSDNOG00000003267 Dasypus novemcinctus ENSDNOG00000003267 I 0.703
NONO Equus caballus ENSECAG00000008502 I 0.703
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.703
NONO Felis catus ENSFCAG00000014807 I 0.703
NONO Homo sapiens ENSG00000147140 D 0.703
NONO Gorilla gorilla ENSGGOG00000006194 I 0.703
NONO Loxodonta africana ENSLAFG00000013422 I 0.703
NONO Microcebus murinus ENSMICG00000000232 I 0.703
NONO Myotis lucifugus ENSMLUG00000002489 I 0.703
NONO Macaca mulatta ENSMMUG00000020481 I 0.703
ENSMPUG00000004937 Mustela putorius furo ENSMPUG00000004937 I 0.703
Nono Mus musculus ENSMUSG00000031311 I 0.703
ENSNLEG00000001278 Nomascus leucogenys ENSNLEG00000001278 I 0.703
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.703
NONO Otolemur garnettii ENSOGAG00000004834 I 0.703
nono Oryzias latipes ENSORLG00000012801 I 0.703
ENSPANG00000013979 Papio anubis ENSPANG00000013979 I 0.703
NONO Procavia capensis ENSPCAG00000002541 I 0.703
ENSPPYG00000020451 Pongo abelii ENSPPYG00000020451 I 0.703
NONO Pan troglodytes ENSPTRG00000022010 I 0.703
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.703
Nono Rattus norvegicus ENSRNOG00000003689 I 0.703
NONO Sus scrofa ENSSSCG00000023245 I 0.703
ENSSTOG00000015869 Ictidomys tridecemlineatus ENSSTOG00000015869 I 0.703
nono Takifugu rubripes ENSTRUG00000005554 I 0.703
NONO Tursiops truncatus ENSTTRG00000009605 I 0.703
NONO Vicugna pacos ENSVPAG00000002272 I 0.703
ENSXMAG00000007929 Xiphophorus maculatus ENSXMAG00000007929 I 0.703
ENSBTAP00000016122-D1 Bos grunniens ENSBTAP00000016122-D1 I 0.703
ENSP00000276079 Macaca fascicularis ENSP00000276079 I 0.703
Myotis_brandtii_NONO_10007307 Myotis brandtii Myotis_brandtii_NONO_10007307 I 0.703
ENSAMEG00000016057 Ailuropoda melanoleuca ENSAMEG00000016057 I 0.703
nono Danio rerio ENSDARG00000020482 I 0.701