ENSGMOG00000011957 (Gadus morhua)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSGMOG00000011957 T081355_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
ENSGMOG00000011957
M11431_2.00		 Gadus morhua NGUDGKKK JPLE
Sasse et al.(2025)
RM_Gad.mor_ENSGMOG00000011957 		0.026

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.796
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.796
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.796
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.796
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.026
(93.99%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGMOP00000012794 RRM 238 315
ENSGMOP00000012794 RRM 312 385

RNA contacting residues

Links

Other RRM family RBPs
Other Gadus morhua RBPs

105 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.954
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.928
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.895
sfpq Oryzias latipes ENSORLG00000007459 I 0.882
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.882
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.868
ENSONIG00000017737 Oreochromis niloticus ENSONIG00000017737 I 0.823
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.822
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.822
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.822
sfpq Danio rerio ENSDARG00000011564 I 0.812
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.809
Aan_R015520 Calypte anna Aan_R015520 I 0.809
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.809
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.809
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.809
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.809
Tal_R009770 Tyto alba Tal_R009770 I 0.809
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.809
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.809
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.803
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.803
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.803
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.803
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.803
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.803
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.796
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.796
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.796
Sfpq Mus musculus ENSMUSG00000028820 I 0.796
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.796
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.796
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.796
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.796
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.796
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.796
SFPQ Procavia capensis ENSPCAG00000006164 I 0.796
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.796
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.796
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.796
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.796
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.796
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.796
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.796
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.796
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.796
SFPQ Bos taurus ENSBTAG00000016328 I 0.796
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.796
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.796
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.796
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.796
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.796
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.796
SFPQ Echinops telfairi ENSETEG00000001095 I 0.796
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.796
SFPQ Homo sapiens ENSG00000116560 D 0.796
SFPQ Gallus gallus ENSGALG00000002514 I 0.796
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.796
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.789
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.776
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.776
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.770
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.770
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.757
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.750
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.743
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.724
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.724
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.724
Aan_R001274 Calypte anna Aan_R001274 I 0.724
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.724
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.724
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.724
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.724
Tal_R009732 Tyto alba Tal_R009732 I 0.724
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.724
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.724
PSPC1 Gallus gallus ENSGALG00000017142 I 0.724
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.717
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.706
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.704
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.704
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.704
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.704
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.704
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.704
Pspc1 Mus musculus ENSMUSG00000021938 I 0.704
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.704
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.704
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.704
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.704
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.704
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.704
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.704
PSPC1 Sorex araneus ENSSARG00000000888 I 0.704
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.704
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.704
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.704
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.704
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.704
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.704
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.704
PSPC1 Felis catus ENSFCAG00000027841 I 0.704
PSPC1 Homo sapiens ENSG00000121390 I 0.704
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.704