XR_022366.1 (Pan troglodytes)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSPTRG00000007591 T03237_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000053808 CCCH ZF 157 183
ENSPTRP00000053809 CCCH ZF 215 232
ENSPTRP00000053809 CCCH ZF 473 499
ENSPTRP00000053810 CCCH ZF 79 103
ENSPTRP00000053810 CCCH ZF 127 144
ENSPTRP00000053810 CCCH ZF 286 312

Links

Other CCCH ZF family RBPs
Other Pan troglodytes RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL014545 Aedes aegypti AAEL014545 N 0.750
AAH72265 Xenopus laevis AAH72265 N 1.000
amel4_ncbi_hmm89035 Apis mellifera amel4_ncbi_hmm89035 N 0.800
Aqu1.225680 Amphimedon queenslandica Aqu1.225680 N 0.743
Bm1_37725 Brugia malayi Bm1_37725 N 0.714
DGIL_AUG5s17350g1t1 Acyrtosiphon pisum DGIL_AUG5s17350g1t1 N 0.729
ENSCSAVG00000004843 Ciona savignyi ENSCSAVG00000004843 N 0.757
UNK Erinaceus europaeus ENSEEUG00000013779 N 0.786
UNK Echinops telfairi ENSETEG00000019640 N 0.822
UNKL Homo sapiens ENSG00000059145 N 1.000
UNKL Gorilla gorilla ENSGGOG00000014915 N 1.000
UNK Microcebus murinus ENSMICG00000007591 N 0.814
ENSMMUG00000006693 Macaca mulatta ENSMMUG00000006693 N 0.963
Unkl Mus musculus ENSMUSG00000015127 N 0.963
ENSOANG00000021809 Ornithorhynchus anatinus ENSOANG00000021809 N 1.000
UNKL Otolemur garnettii ENSOGAG00000001437 N 1.000
UNK Otolemur garnettii ENSOGAG00000001922 N 0.757
UNK Oryzias latipes ENSORLG00000018637 N 0.771
RGD1565247 Rattus norvegicus ENSRNOG00000017598 N 0.978
UNK Tupaia belangeri ENSTBEG00000016178 N 0.889
UNKL Takifugu rubripes ENSTRUG00000012086 N 0.956
UNKL Tursiops truncatus ENSTTRG00000011985 N 0.956
UNK Vicugna pacos ENSVPAG00000011532 N 0.889
unkl Xenopus tropicalis ENSXETG00000021599 N 1.000
e_gw.10.245.1 Nematostella vectensis e_gw.10.245.1 N 0.786
GK12832 Drosophila willistoni FBgn0214841 N 0.771
fgenesh2_pg.scaffold_5000153 Branchiostoma floridae fgenesh2_pg.scaffold_5000153 N 0.786
LOAG_04272 Loa loa LOAG_04272 N 0.729
nasonia_NCBI_hmm1068274 Nasonia vitripennis nasonia_NCBI_hmm1068274 N 0.757
Sjc_0008870 Schistosoma japonicum Sjc_0008870 N 0.757
Smp_154250 Schistosoma mansoni Smp_154250 N 0.757
WUBG_00870 Wuchereria bancrofti WUBG_00870 N 0.714
XP_001180099.1 Strongylocentrotus purpuratus XP_001180099.1 N 0.814
XP_002155288.1 Hydra magnipapillata XP_002155288.1 N 0.761
XP_789013.2 Strongylocentrotus purpuratus XP_789013.2 N 0.814