LOC_Os06g21390 (Oryza sativa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 LOC_Os06g21390 T03957_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os06g21390.1 CCCH ZF 3 27
LOC_Os06g21390.1 CCCH ZF 34 56
LOC_Os06g21390.1 CCCH ZF 149 173
LOC_Os06g21390.1 CCCH ZF 305 331
LOC_Os06g21390.2 CCCH ZF 3 27
LOC_Os06g21390.2 CCCH ZF 34 56
LOC_Os06g21390.2 CCCH ZF 149 173
LOC_Os06g21390.2 CCCH ZF 305 331
LOC_Os06g21390.3 CCCH ZF 1 16
LOC_Os06g21390.3 CCCH ZF 23 45
LOC_Os06g21390.3 CCCH ZF 138 162
LOC_Os06g21390.3 CCCH ZF 294 320
LOC_Os06g21390.4 CCCH ZF 45 69
LOC_Os06g21390.4 CCCH ZF 201 227

Links

Other CCCH ZF family RBPs
Other Oryza sativa RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30061.m000291 Ricinus communis 30061.m000291 N 0.755
AT3G08505 Arabidopsis thaliana AT3G08505-TAIR-G N 0.735
BGIOSIBCE021686 Oryza indica BGIOSIBCE021686 N 1.000
BRADI1G42720 Brachypodium distachyon BRADI1G42720 N 0.931
BRADI3G53502 Brachypodium distachyon BRADI3G53502 N 0.703
cassava36555.valid.m1 Manihot esculenta cassava36555.valid.m1 N 0.745
Cucsa.050240 Cucumis sativus Cucsa.050240 N 0.775
XM_002884635.1 Arabidopsis lyrata fgenesh2_kg.3__850__AT3G08505.2 N 0.745
Glyma08g16340.1 Glycine max Glyma08g16340.1 N 0.802
Glyma15g42750.1 Glycine max Glyma15g42750.1 N 0.822
MDP0000170583 Malus x domestica MDP0000170583 N 0.735
MDP0000173577 Malus x domestica MDP0000173577 N 0.716
Medtr3g030250 Medicago truncatula Medtr3g030250 N 0.832
mgf018432m Mimulus guttatus mgf018432m N 0.762
PK11636.1 Cannabis sativa PK11636.1 N 0.762
A9P800_POPTR Populus trichocarpa POPTR_0009s06730 N 0.762
ppa006435m Prunus persica ppa006435m N 0.752
Sb10g012170 Sorghum bicolor Sb10g012170 N 0.901
XM_002876682.1 Arabidopsis lyrata scaffold_503646.1 N 0.728