Glyma08g16340.1 (Glycine max)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Glyma08g16340.1 T05416_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma08g16340.1 CCCH ZF 2 26
Glyma08g16340.1 CCCH ZF 32 55
Glyma08g16340.1 CCCH ZF 144 167
Glyma08g16340.1 CCCH ZF 299 325

Links

Other CCCH ZF family RBPs
Other Glycine max RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma15g42750.1 Glycine max Glyma15g42750.1 N 0.960
Medtr3g030250 Medicago truncatula Medtr3g030250 N 0.921
A9P800_POPTR Populus trichocarpa POPTR_0009s06730 N 0.861
PK11636.1 Cannabis sativa PK11636.1 N 0.851
ppa006435m Prunus persica ppa006435m N 0.833
MDP0000170583 Malus x domestica MDP0000170583 N 0.833
30061.m000291 Ricinus communis 30061.m000291 N 0.824
MDP0000173577 Malus x domestica MDP0000173577 N 0.814
cassava36555.valid.m1 Manihot esculenta cassava36555.valid.m1 N 0.814
BRADI1G42720 Brachypodium distachyon BRADI1G42720 N 0.812
mgf018432m Mimulus guttatus mgf018432m N 0.812
Cucsa.050240 Cucumis sativus Cucsa.050240 N 0.804
Sb10g012170 Sorghum bicolor Sb10g012170 N 0.802
BGIOSIBCE021686 Oryza indica BGIOSIBCE021686 N 0.802
LOC_Os06g21390 Oryza sativa LOC_Os06g21390 N 0.802
XM_002876682.1 Arabidopsis lyrata scaffold_503646.1 N 0.786
cassava29658.valid.m1 Manihot esculenta cassava29658.valid.m1 N 0.775
XM_002884635.1 Arabidopsis lyrata fgenesh2_kg.3__850__AT3G08505.2 N 0.775
AT3G08505 Arabidopsis thaliana AT3G08505-TAIR-G N 0.765