PK11636.1 (Cannabis sativa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 PK11636.1 T01758_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK11636.1 CCCH ZF 28 52
PK11636.1 CCCH ZF 58 81
PK11636.1 CCCH ZF 167 191
PK11636.1 CCCH ZF 323 347

Links

Other CCCH ZF family RBPs
Other Cannabis sativa RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma15g42750.1 Glycine max Glyma15g42750.1 N 0.861
Glyma08g16340.1 Glycine max Glyma08g16340.1 N 0.851
Medtr3g030250 Medicago truncatula Medtr3g030250 N 0.851
MDP0000173577 Malus x domestica MDP0000173577 N 0.830
mgf018432m Mimulus guttatus mgf018432m N 0.822
ppa006435m Prunus persica ppa006435m N 0.814
MDP0000170583 Malus x domestica MDP0000170583 N 0.814
A9P800_POPTR Populus trichocarpa POPTR_0009s06730 N 0.812
Sb10g012170 Sorghum bicolor Sb10g012170 N 0.808
Cucsa.050240 Cucumis sativus Cucsa.050240 N 0.802
30061.m000291 Ricinus communis 30061.m000291 N 0.794
XM_002876682.1 Arabidopsis lyrata scaffold_503646.1 N 0.777
BRADI1G42720 Brachypodium distachyon BRADI1G42720 N 0.772
cassava29658.valid.m1 Manihot esculenta cassava29658.valid.m1 N 0.765
cassava36555.valid.m1 Manihot esculenta cassava36555.valid.m1 N 0.765
BGIOSIBCE021686 Oryza indica BGIOSIBCE021686 N 0.762
LOC_Os06g21390 Oryza sativa LOC_Os06g21390 N 0.762
XM_002884635.1 Arabidopsis lyrata fgenesh2_kg.3__850__AT3G08505.2 N 0.745
AT3G08505 Arabidopsis thaliana AT3G08505-TAIR-G N 0.735