XM_002876682.1 (Arabidopsis lyrata)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 scaffold_503646.1 T04151_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_503646.1 CCCH ZF 2 26
scaffold_503646.1 CCCH ZF 31 55
scaffold_503646.1 CCCH ZF 133 158
scaffold_503646.1 CCCH ZF 292 316

Links

Other CCCH ZF family RBPs
Other Arabidopsis lyrata RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30061.m000291 Ricinus communis 30061.m000291 N 0.861
cassava36555.valid.m1 Manihot esculenta cassava36555.valid.m1 N 0.861
A9P800_POPTR Populus trichocarpa POPTR_0009s06730 N 0.842
Medtr3g030250 Medicago truncatula Medtr3g030250 N 0.825
Glyma15g42750.1 Glycine max Glyma15g42750.1 N 0.816
cassava29658.valid.m1 Manihot esculenta cassava29658.valid.m1 N 0.812
MDP0000170583 Malus x domestica MDP0000170583 N 0.802
XM_002884635.1 Arabidopsis lyrata fgenesh2_kg.3__850__AT3G08505.2 N 0.802
ppa006435m Prunus persica ppa006435m N 0.802
AT3G08505 Arabidopsis thaliana AT3G08505-TAIR-G N 0.792
MDP0000173577 Malus x domestica MDP0000173577 N 0.792
Glyma08g16340.1 Glycine max Glyma08g16340.1 N 0.786
Cucsa.050240 Cucumis sativus Cucsa.050240 N 0.784
PK11636.1 Cannabis sativa PK11636.1 N 0.777
mgf018432m Mimulus guttatus mgf018432m N 0.757
BRADI1G42720 Brachypodium distachyon BRADI1G42720 N 0.748
LOC_Os06g21390 Oryza sativa LOC_Os06g21390 N 0.728
BGIOSIBCE021686 Oryza indica BGIOSIBCE021686 N 0.728
Sb10g012170 Sorghum bicolor Sb10g012170 N 0.709