XM_002884635.1 (Arabidopsis lyrata)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgenesh2_kg.3__850__AT3G08505.2 T03848_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__850__AT3G08505.2 CCCH ZF 2 27
fgenesh2_kg.3__850__AT3G08505.2 CCCH ZF 32 55
fgenesh2_kg.3__850__AT3G08505.2 CCCH ZF 102 126
fgenesh2_kg.3__850__AT3G08505.2 CCCH ZF 260 284

Links

Other CCCH ZF family RBPs
Other Arabidopsis lyrata RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT3G08505 Arabidopsis thaliana AT3G08505-TAIR-G N 0.990
Medtr3g030250 Medicago truncatula Medtr3g030250 N 0.814
A9P800_POPTR Populus trichocarpa POPTR_0009s06730 N 0.810
XM_002876682.1 Arabidopsis lyrata scaffold_503646.1 N 0.802
Cucsa.050240 Cucumis sativus Cucsa.050240 N 0.792
Glyma15g42750.1 Glycine max Glyma15g42750.1 N 0.784
Glyma08g16340.1 Glycine max Glyma08g16340.1 N 0.775
30061.m000291 Ricinus communis 30061.m000291 N 0.772
BRADI1G42720 Brachypodium distachyon BRADI1G42720 N 0.765
cassava36555.valid.m1 Manihot esculenta cassava36555.valid.m1 N 0.762
BGIOSIBCE021686 Oryza indica BGIOSIBCE021686 N 0.745
LOC_Os06g21390 Oryza sativa LOC_Os06g21390 N 0.745
PK11636.1 Cannabis sativa PK11636.1 N 0.745
mgf018432m Mimulus guttatus mgf018432m N 0.745
MDP0000170583 Malus x domestica MDP0000170583 N 0.743
ppa006435m Prunus persica ppa006435m N 0.743
MDP0000173577 Malus x domestica MDP0000173577 N 0.733
Sb10g012170 Sorghum bicolor Sb10g012170 N 0.725
cassava29658.valid.m1 Manihot esculenta cassava29658.valid.m1 N 0.713