BRADI1G42720 (Brachypodium distachyon)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 BRADI1G42720 T01978_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI1G42720.1 CCCH ZF 3 27
BRADI1G42720.1 CCCH ZF 33 56
BRADI1G42720.1 CCCH ZF 164 188
BRADI1G42720.1 CCCH ZF 320 346
BRADI1G42720.2 CCCH ZF 3 27
BRADI1G42720.2 CCCH ZF 33 56
BRADI1G42720.2 CCCH ZF 164 188
BRADI1G42720.2 CCCH ZF 320 346

Links

Other CCCH ZF family RBPs
Other Brachypodium distachyon RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os06g21390 Oryza sativa LOC_Os06g21390 N 0.931
BGIOSIBCE021686 Oryza indica BGIOSIBCE021686 N 0.931
Sb10g012170 Sorghum bicolor Sb10g012170 N 0.891
Medtr3g030250 Medicago truncatula Medtr3g030250 N 0.842
Glyma15g42750.1 Glycine max Glyma15g42750.1 N 0.832
Glyma08g16340.1 Glycine max Glyma08g16340.1 N 0.812
mgf018432m Mimulus guttatus mgf018432m N 0.782
A9P800_POPTR Populus trichocarpa POPTR_0009s06730 N 0.782
30061.m000291 Ricinus communis 30061.m000291 N 0.775
PK11636.1 Cannabis sativa PK11636.1 N 0.772
Cucsa.050240 Cucumis sativus Cucsa.050240 N 0.765
XM_002884635.1 Arabidopsis lyrata fgenesh2_kg.3__850__AT3G08505.2 N 0.765
ppa006435m Prunus persica ppa006435m N 0.755
cassava36555.valid.m1 Manihot esculenta cassava36555.valid.m1 N 0.755
MDP0000170583 Malus x domestica MDP0000170583 N 0.755
AT3G08505 Arabidopsis thaliana AT3G08505-TAIR-G N 0.755
XM_002876682.1 Arabidopsis lyrata scaffold_503646.1 N 0.748
MDP0000173577 Malus x domestica MDP0000173577 N 0.735
cassava29658.valid.m1 Manihot esculenta cassava29658.valid.m1 N 0.706