Cucsa.050240 (Cucumis sativus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Cucsa.050240 T04822_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.050240.1 CCCH ZF 2 26
Cucsa.050240.1 CCCH ZF 32 55
Cucsa.050240.1 CCCH ZF 136 161
Cucsa.050240.1 CCCH ZF 295 319
Cucsa.050240.2 CCCH ZF 2 26
Cucsa.050240.2 CCCH ZF 32 55
Cucsa.050240.2 CCCH ZF 136 161
Cucsa.050240.2 CCCH ZF 295 318
Cucsa.050240.3 CCCH ZF 2 26
Cucsa.050240.3 CCCH ZF 32 55
Cucsa.050240.3 CCCH ZF 136 161
Cucsa.050240.3 CCCH ZF 295 318
Cucsa.050240.4 CCCH ZF 2 26
Cucsa.050240.4 CCCH ZF 32 55
Cucsa.050240.4 CCCH ZF 136 161
Cucsa.050240.4 CCCH ZF 295 318
Cucsa.050240.5 CCCH ZF 2 26
Cucsa.050240.5 CCCH ZF 32 55
Cucsa.050240.5 CCCH ZF 136 161
Cucsa.050240.5 CCCH ZF 295 318
Cucsa.050240.6 CCCH ZF 2 26
Cucsa.050240.6 CCCH ZF 32 55
Cucsa.050240.6 CCCH ZF 136 161
Cucsa.050240.6 CCCH ZF 295 315

Links

Other CCCH ZF family RBPs
Other Cucumis sativus RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000173577 Malus x domestica MDP0000173577 N 0.835
ppa006435m Prunus persica ppa006435m N 0.832
MDP0000170583 Malus x domestica MDP0000170583 N 0.822
Medtr3g030250 Medicago truncatula Medtr3g030250 N 0.814
Glyma15g42750.1 Glycine max Glyma15g42750.1 N 0.814
A9P800_POPTR Populus trichocarpa POPTR_0009s06730 N 0.810
Glyma08g16340.1 Glycine max Glyma08g16340.1 N 0.804
PK11636.1 Cannabis sativa PK11636.1 N 0.802
30061.m000291 Ricinus communis 30061.m000291 N 0.802
XM_002884635.1 Arabidopsis lyrata fgenesh2_kg.3__850__AT3G08505.2 N 0.792
XM_002876682.1 Arabidopsis lyrata scaffold_503646.1 N 0.784
AT3G08505 Arabidopsis thaliana AT3G08505-TAIR-G N 0.782
LOC_Os06g21390 Oryza sativa LOC_Os06g21390 N 0.775
BGIOSIBCE021686 Oryza indica BGIOSIBCE021686 N 0.775
cassava36555.valid.m1 Manihot esculenta cassava36555.valid.m1 N 0.772
mgf018432m Mimulus guttatus mgf018432m N 0.765
BRADI1G42720 Brachypodium distachyon BRADI1G42720 N 0.765
cassava29658.valid.m1 Manihot esculenta cassava29658.valid.m1 N 0.752
Sb10g012170 Sorghum bicolor Sb10g012170 N 0.752