ppa006435m (Prunus persica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ppa006435m T06521_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa006435m CCCH ZF 2 26
ppa006435m CCCH ZF 33 55
ppa006435m CCCH ZF 146 171
ppa006435m CCCH ZF 306 329

Links

Other CCCH ZF family RBPs
Other Prunus persica RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000170583 Malus x domestica MDP0000170583 N 0.970
MDP0000173577 Malus x domestica MDP0000173577 N 0.929
30061.m000291 Ricinus communis 30061.m000291 N 0.889
Glyma15g42750.1 Glycine max Glyma15g42750.1 N 0.863
cassava36555.valid.m1 Manihot esculenta cassava36555.valid.m1 N 0.859
cassava29658.valid.m1 Manihot esculenta cassava29658.valid.m1 N 0.859
A9P800_POPTR Populus trichocarpa POPTR_0009s06730 N 0.850
Medtr3g030250 Medicago truncatula Medtr3g030250 N 0.843
Glyma08g16340.1 Glycine max Glyma08g16340.1 N 0.833
Cucsa.050240 Cucumis sativus Cucsa.050240 N 0.832
PK11636.1 Cannabis sativa PK11636.1 N 0.814
XM_002876682.1 Arabidopsis lyrata scaffold_503646.1 N 0.802
mgf018432m Mimulus guttatus mgf018432m N 0.784
Sb10g012170 Sorghum bicolor Sb10g012170 N 0.755
BRADI1G42720 Brachypodium distachyon BRADI1G42720 N 0.755
BGIOSIBCE021686 Oryza indica BGIOSIBCE021686 N 0.752
LOC_Os06g21390 Oryza sativa LOC_Os06g21390 N 0.752
XM_002884635.1 Arabidopsis lyrata fgenesh2_kg.3__850__AT3G08505.2 N 0.743
AT3G08505 Arabidopsis thaliana AT3G08505-TAIR-G N 0.733