Sb10g012170 (Sorghum bicolor)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Sb10g012170 T04134_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb10g012170.1 CCCH ZF 3 27
Sb10g012170.1 CCCH ZF 33 56
Sb10g012170.1 CCCH ZF 151 175
Sb10g012170.1 CCCH ZF 307 331
Sb10g012170.2 CCCH ZF 3 27
Sb10g012170.2 CCCH ZF 33 56
Sb10g012170.2 CCCH ZF 151 175
Sb10g012170.2 CCCH ZF 307 331

Links

Other CCCH ZF family RBPs
Other Sorghum bicolor RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE021686 Oryza indica BGIOSIBCE021686 N 0.901
LOC_Os06g21390 Oryza sativa LOC_Os06g21390 N 0.901
BRADI1G42720 Brachypodium distachyon BRADI1G42720 N 0.891
Medtr3g030250 Medicago truncatula Medtr3g030250 N 0.822
Glyma15g42750.1 Glycine max Glyma15g42750.1 N 0.812
PK11636.1 Cannabis sativa PK11636.1 N 0.808
Glyma08g16340.1 Glycine max Glyma08g16340.1 N 0.802
mgf018432m Mimulus guttatus mgf018432m N 0.782
MDP0000173577 Malus x domestica MDP0000173577 N 0.760
ppa006435m Prunus persica ppa006435m N 0.755
MDP0000170583 Malus x domestica MDP0000170583 N 0.755
30061.m000291 Ricinus communis 30061.m000291 N 0.755
A9P800_POPTR Populus trichocarpa POPTR_0009s06730 N 0.752
Cucsa.050240 Cucumis sativus Cucsa.050240 N 0.752
cassava36555.valid.m1 Manihot esculenta cassava36555.valid.m1 N 0.735
XM_002884635.1 Arabidopsis lyrata fgenesh2_kg.3__850__AT3G08505.2 N 0.725
AT3G08505 Arabidopsis thaliana AT3G08505-TAIR-G N 0.716
XM_002876682.1 Arabidopsis lyrata scaffold_503646.1 N 0.709