cassava36555.valid.m1 (Manihot esculenta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 cassava36555.valid.m1 T04800_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava36555.valid.m1 CCCH ZF 2 26
cassava36555.valid.m1 CCCH ZF 32 55
cassava36555.valid.m1 CCCH ZF 140 165
cassava36555.valid.m1 CCCH ZF 300 323

Links

Other CCCH ZF family RBPs
Other Manihot esculenta RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30061.m000291 Ricinus communis 30061.m000291 N 0.929
cassava29658.valid.m1 Manihot esculenta cassava29658.valid.m1 N 0.909
A9P800_POPTR Populus trichocarpa POPTR_0009s06730 N 0.900
MDP0000170583 Malus x domestica MDP0000170583 N 0.869
XM_002876682.1 Arabidopsis lyrata scaffold_503646.1 N 0.861
ppa006435m Prunus persica ppa006435m N 0.859
Glyma15g42750.1 Glycine max Glyma15g42750.1 N 0.853
MDP0000173577 Malus x domestica MDP0000173577 N 0.848
Medtr3g030250 Medicago truncatula Medtr3g030250 N 0.833
Glyma08g16340.1 Glycine max Glyma08g16340.1 N 0.814
mgf018432m Mimulus guttatus mgf018432m N 0.794
Cucsa.050240 Cucumis sativus Cucsa.050240 N 0.772
PK11636.1 Cannabis sativa PK11636.1 N 0.765
XM_002884635.1 Arabidopsis lyrata fgenesh2_kg.3__850__AT3G08505.2 N 0.762
BRADI1G42720 Brachypodium distachyon BRADI1G42720 N 0.755
AT3G08505 Arabidopsis thaliana AT3G08505-TAIR-G N 0.752
BGIOSIBCE021686 Oryza indica BGIOSIBCE021686 N 0.745
LOC_Os06g21390 Oryza sativa LOC_Os06g21390 N 0.745
Sb10g012170 Sorghum bicolor Sb10g012170 N 0.735