AT3G08505 (Arabidopsis thaliana)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 AT3G08505-TAIR-G T01899_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT3G08505.1-P CCCH ZF 2 27
AT3G08505.1-P CCCH ZF 32 55
AT3G08505.1-P CCCH ZF 103 127
AT3G08505.1-P CCCH ZF 261 285
AT3G08505.2-P CCCH ZF 2 27
AT3G08505.2-P CCCH ZF 32 55
AT3G08505.2-P CCCH ZF 103 127
AT3G08505.2-P CCCH ZF 261 285

Links

Other CCCH ZF family RBPs
Other Arabidopsis thaliana RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002884635.1 Arabidopsis lyrata fgenesh2_kg.3__850__AT3G08505.2 N 0.990
Medtr3g030250 Medicago truncatula Medtr3g030250 N 0.804
A9P800_POPTR Populus trichocarpa POPTR_0009s06730 N 0.800
XM_002876682.1 Arabidopsis lyrata scaffold_503646.1 N 0.792
Cucsa.050240 Cucumis sativus Cucsa.050240 N 0.782
Glyma15g42750.1 Glycine max Glyma15g42750.1 N 0.775
Glyma08g16340.1 Glycine max Glyma08g16340.1 N 0.765
30061.m000291 Ricinus communis 30061.m000291 N 0.762
BRADI1G42720 Brachypodium distachyon BRADI1G42720 N 0.755
cassava36555.valid.m1 Manihot esculenta cassava36555.valid.m1 N 0.752
mgf018432m Mimulus guttatus mgf018432m N 0.735
PK11636.1 Cannabis sativa PK11636.1 N 0.735
BGIOSIBCE021686 Oryza indica BGIOSIBCE021686 N 0.735
LOC_Os06g21390 Oryza sativa LOC_Os06g21390 N 0.735
ppa006435m Prunus persica ppa006435m N 0.733
MDP0000170583 Malus x domestica MDP0000170583 N 0.733
MDP0000173577 Malus x domestica MDP0000173577 N 0.723
Sb10g012170 Sorghum bicolor Sb10g012170 N 0.716
cassava29658.valid.m1 Manihot esculenta cassava29658.valid.m1 N 0.703