MDP0000870155 (Malus x domestica)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		MDP0000870155 T07683_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000870155 RRM 4 63
MDP0000870155 CCHC ZF 90 107

Links

Other CCHC ZF,RRM family RBPs
Other Malus x domestica RBPs

49 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28610.m000073 Ricinus communis 28610.m000073 N 0.872
29848.m004475 Ricinus communis 29848.m004475 N 0.859
SRZ-21 Arabidopsis thaliana AT1G23860-TAIR-G N 0.846
RSZ22a Arabidopsis thaliana AT2G24590-TAIR-G N 0.795
SRZ-22 Arabidopsis thaliana AT4G31580-TAIR-G N 0.821
BGIOSIBCE008925 Oryza indica BGIOSIBCE008925 N 0.709
BGIOSIBCE020929 Oryza indica BGIOSIBCE020929 N 0.747
BRADI1G46980 Brachypodium distachyon BRADI1G46980 N 0.734
cassava18359.valid.m1 Manihot esculenta cassava18359.valid.m1 N 0.859
cassava37340.valid.m1 Manihot esculenta cassava37340.valid.m1 N 0.833
cassava38162.valid.m1 Manihot esculenta cassava38162.valid.m1 N 0.885
cassava8058.valid.m1 Manihot esculenta cassava8058.valid.m1 N 0.859
Cucsa.285940 Cucumis sativus Cucsa.285940 N 0.923
Cucsa.311100 Cucumis sativus Cucsa.311100 N 0.846
e_gw1.207.127.1 Physcomitrella patens e_gw1.207.127.1 N 0.747
e_gw1.332.33.1 Physcomitrella patens e_gw1.332.33.1 N 0.747
XM_002893265.1 Arabidopsis lyrata fgenesh2_kg.1__2600__AT1G23860.3 N 0.859
XM_002878724.1 Arabidopsis lyrata fgenesh2_kg.4__375__AT2G24590.1 N 0.795
XM_002869274.1 Arabidopsis lyrata fgenesh2_kg.7__1015__AT4G31580.1 N 0.795
Glyma08g39830.1 Glycine max Glyma08g39830.1 N 0.910
Glyma14g17930.1 Glycine max Glyma14g17930.1 N 0.872
Glyma17g29080.1 Glycine max Glyma17g29080.1 N 0.872
Glyma18g18860.1 Glycine max Glyma18g18860.1 N 0.897
GRMZM2G027105 Zea mays GRMZM2G027105 N 0.747
GRMZM2G070239 Zea mays GRMZM2G070239 N 0.734
GRMZM2G080930 Zea mays GRMZM2G080930 N 0.722
GRMZM2G151923 Zea mays GRMZM2G151923 N 0.722
GSVIVG00020220001 Vitis vinifera GSVIVG00020220001 N 0.821
GSVIVG00033172001 Vitis vinifera GSVIVG00033172001 N 0.859
gw1.3.1555.1 Selaginella moellendorfii gw1.3.1555.1 N 0.795
LjSGA_021019.1 Lotus japonicus LjSGA_021019.1 N 0.897
LOC_Os02g39720 Oryza sativa LOC_Os02g39720 N 0.759
LOC_Os02g54770 Oryza sativa LOC_Os02g54770 N 0.722
LOC_Os06g08840 Oryza sativa LOC_Os06g08840 N 0.747
MDP0000256723 Malus x domestica MDP0000256723 N 0.949
Medtr1g010600 Medicago truncatula Medtr1g010600 N 0.859
Medtr3g133170 Medicago truncatula Medtr3g133170 N 0.808
mgf005494m Mimulus guttatus mgf005494m N 0.833
mgf014721m Mimulus guttatus mgf014721m N 0.833
PDK_20s1302151g001 Phoenix dactylifera PDK_20s1302151g001 N 0.846
PK15383.1 Cannabis sativa PK15383.1 N 0.859
PK23390.1 Cannabis sativa PK23390.1 N 0.936
B9N668_POPTR Populus trichocarpa POPTR_0006s28720 N 0.859
B9ILD8_POPTR Populus trichocarpa POPTR_0018s03390 N 0.823
ppa012111m Prunus persica ppa012111m N 0.923
ppa012147m Prunus persica ppa012147m N 0.808
Sb04g025670 Sorghum bicolor Sb04g025670 N 0.747
SB04G035540 Sorghum bicolor Sb04g035540 N 0.734
SB10G005960 Sorghum bicolor Sb10g005960 N 0.734