BGIOSIBCE008925 (Oryza indica)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		BGIOSIBCE008925 T07163_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE008925 RRM 4 64
BGIOSIBCE008925 CCHC ZF 205 222

Links

Other CCHC ZF,RRM family RBPs
Other Oryza indica RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os02g54770 Oryza sativa LOC_Os02g54770 N 0.949
GRMZM2G070239 Zea mays GRMZM2G070239 N 0.886
SB04G035540 Sorghum bicolor Sb04g035540 N 0.886
BRADI3G53760 Brachypodium distachyon BRADI3G53760 N 0.886
SB10G005960 Sorghum bicolor Sb10g005960 N 0.886
GRMZM2G080930 Zea mays GRMZM2G080930 N 0.873
GRMZM2G151923 Zea mays GRMZM2G151923 N 0.873
LOC_Os02g39720 Oryza sativa LOC_Os02g39720 N 0.861
LOC_Os06g08840 Oryza sativa LOC_Os06g08840 N 0.848
BGIOSIBCE020929 Oryza indica BGIOSIBCE020929 N 0.848
BRADI1G46980 Brachypodium distachyon BRADI1G46980 N 0.835
GRMZM2G027105 Zea mays GRMZM2G027105 N 0.823
Sb04g025670 Sorghum bicolor Sb04g025670 N 0.823
BRADI3G48460 Brachypodium distachyon BRADI3G48460 N 0.797
GSVIVG00033172001 Vitis vinifera GSVIVG00033172001 N 0.785
e_gw1.332.33.1 Physcomitrella patens e_gw1.332.33.1 N 0.772
cassava18359.valid.m1 Manihot esculenta cassava18359.valid.m1 N 0.772
e_gw1.207.127.1 Physcomitrella patens e_gw1.207.127.1 N 0.772
cassava8058.valid.m1 Manihot esculenta cassava8058.valid.m1 N 0.759
mgf014721m Mimulus guttatus mgf014721m N 0.759
mgf005494m Mimulus guttatus mgf005494m N 0.759
Cucsa.311100 Cucumis sativus Cucsa.311100 N 0.759
B9ILD8_POPTR Populus trichocarpa POPTR_0018s03390 N 0.759
29848.m004475 Ricinus communis 29848.m004475 N 0.759
B9N668_POPTR Populus trichocarpa POPTR_0006s28720 N 0.747
XM_002893265.1 Arabidopsis lyrata fgenesh2_kg.1__2600__AT1G23860.3 N 0.747
PK15383.1 Cannabis sativa PK15383.1 N 0.747
SRZ-22 Arabidopsis thaliana AT4G31580-TAIR-G N 0.747
Medtr1g010600 Medicago truncatula Medtr1g010600 N 0.747
XM_002869274.1 Arabidopsis lyrata fgenesh2_kg.7__1015__AT4G31580.1 N 0.747
Glyma17g29080.1 Glycine max Glyma17g29080.1 N 0.747
Glyma14g17930.1 Glycine max Glyma14g17930.1 N 0.747
ppa012147m Prunus persica ppa012147m N 0.734
PDK_20s1302151g001 Phoenix dactylifera PDK_20s1302151g001 N 0.734
XM_002878724.1 Arabidopsis lyrata fgenesh2_kg.4__375__AT2G24590.1 N 0.734
28610.m000073 Ricinus communis 28610.m000073 N 0.734
PK23390.1 Cannabis sativa PK23390.1 N 0.722
RSZ22a Arabidopsis thaliana AT2G24590-TAIR-G N 0.722
Glyma08g39830.1 Glycine max Glyma08g39830.1 N 0.722
GSVIVG00020220001 Vitis vinifera GSVIVG00020220001 N 0.722
Cucsa.285940 Cucumis sativus Cucsa.285940 N 0.722
SRZ-21 Arabidopsis thaliana AT1G23860-TAIR-G N 0.722
cassava38162.valid.m1 Manihot esculenta cassava38162.valid.m1 N 0.722
gw1.3.1555.1 Selaginella moellendorfii gw1.3.1555.1 N 0.722
LjSGA_021019.1 Lotus japonicus LjSGA_021019.1 N 0.709
Glyma18g18860.1 Glycine max Glyma18g18860.1 N 0.709
MDP0000870155 Malus x domestica MDP0000870155 N 0.709