LOC_Os09g04570 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os09g04570 T12078_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os09g04570.1 CCHC ZF 171 187
LOC_Os09g04570.1 CCHC ZF 343 360

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

10 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29868.m000351 Ricinus communis 29868.m000351 N 0.000
AAEL005909 Aedes aegypti AAEL005909 N 0.000
AGAP002780 Anopheles gambiae AGAP002780 N 0.000
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.000
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.000
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.000
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.000
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.000
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.000
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.000
EDO06533.1 Babesia bovis EDO06533.1 N 0.000
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.000
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.000
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.000
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.000
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.000
CG13298 Drosophila melanogaster FBgn0035692 N 0.000
GE20495 Drosophila yakuba FBgn0068445 N 0.000
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.000
GF10910 Drosophila ananassae FBgn0087950 N 0.000
GG14070 Drosophila erecta FBgn0106332 N 0.000
GH16287 Drosophila grimshawi FBgn0123758 N 0.000
GI13232 Drosophila mojavensis FBgn0135989 N 0.000
GL22529 Drosophila persimilis FBgn0160121 N 0.000
GM13852 Drosophila sechellia FBgn0168783 N 0.000
GD13137 Drosophila simulans FBgn0184859 N 0.000
GJ12004 Drosophila virilis FBgn0199256 N 0.000
GK17258 Drosophila willistoni FBgn0219257 N 0.000
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.000
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.000
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.000
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.000
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.000
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.000
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.000
MDP0000185506 Malus x domestica MDP0000185506 N 0.000
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.000
mgf016428m Mimulus guttatus mgf016428m N 0.000
NCLIV_001260 Neospora caninum NCLIV_001260 N 0.000
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.000
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.000
PFL1200c Plasmodium falciparum PFL1200c N 0.000
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.000
PITG_10282 Phytophthora infestans PITG_10282 N 0.000
PK21780.1 Cannabis sativa PK21780.1 N 0.000
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.000
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.000
ppa013405m Prunus persica ppa013405m N 0.000
ppa013407m Prunus persica ppa013407m N 0.000
PVX_123875 Plasmodium vivax PVX_123875 N 0.000
PY07239 Plasmodium yoelii PY07239 N 0.000
SB01G003790 Sorghum bicolor Sb01g003790 N 0.000
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.000
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.000
s_454910 Phytophthora sojae s_454910 N 0.000
TA13725 Theileria annulata TA13725 N 0.000
TGGT1_042490 Toxoplasma gondii TGGT1_042490 N 0.000
TGME49_105010 Toxoplasma gondii TGME49_105010 N 0.000
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.000