GJ12004 (Drosophila virilis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0199256 T44031_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0226421 RRM 17 84

Links

Other RRM family RBPs
Other Drosophila virilis RBPs

144 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GF10910 Drosophila ananassae FBgn0087950 N 1.000
GH16287 Drosophila grimshawi FBgn0123758 N 1.000
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 1.000
GE20495 Drosophila yakuba FBgn0068445 N 1.000
CG13298 Drosophila melanogaster FBgn0035692 N 1.000
GI13232 Drosophila mojavensis FBgn0135989 N 1.000
GG14070 Drosophila erecta FBgn0106332 N 1.000
GK17258 Drosophila willistoni FBgn0219257 N 1.000
GM13852 Drosophila sechellia FBgn0168783 N 1.000
GD13137 Drosophila simulans FBgn0184859 N 1.000
GL22529 Drosophila persimilis FBgn0160121 N 1.000
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.971
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.942
AAEL005909 Aedes aegypti AAEL005909 N 0.942
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.942
AGAP002780 Anopheles gambiae AGAP002780 N 0.928
LOAG_04189 Loa loa LOAG_04189 N 0.912
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.899
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.899
PHUM617060 Pediculus humanus PHUM617060 N 0.899
ISCW024082 Ixodes scapularis ISCW024082 N 0.899
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.899
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.899
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.884
LOC100056247 Equus caballus ENSECAG00000015618 N 0.870
sf3b14 Danio rerio ENSDARG00000009753 N 0.870
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.870
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.870
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.870
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.870
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.870
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.870
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.870
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.870
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.870
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.870
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.870
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.870
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.870
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.870
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.870
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.870
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.870
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.870
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.870
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.870
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.870
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.870
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.870
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.870
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.870
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.870
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.870
SF3B14 Gallus gallus ENSGALG00000016501 N 0.870
AC008073.5 Homo sapiens ENSG00000115128 N 0.870
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.870
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.870
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.870
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.870
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.855
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.855
AAH57709 Xenopus laevis AAH57709 N 0.855
68671 Helobdella robusta 68671 N 0.855
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.855
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.855
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.853
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.841
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.841
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.841
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.841
Minc01156 Meloidogyne incognita Minc01156 N 0.841
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.838
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.826
PPA24922 Pristionchus pacificus PPA24922 N 0.826
CRE22109 Caenorhabditis remanei CRE22109 N 0.812
CBG06987 Caenorhabditis briggsae CBG06987 N 0.812
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.812
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.812
CBN08400 Caenorhabditis brenneri CBN08400 N 0.812
mgf016428m Mimulus guttatus mgf016428m N 0.809
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.809
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.797
CJA01433 Caenorhabditis japonica CJA01433 N 0.797
Smp_032060 Schistosoma mansoni Smp_032060 N 0.797
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.797
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.797
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.797
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.797
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.794
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.794
s_454910 Phytophthora sojae s_454910 N 0.794
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.794
PITG_10282 Phytophthora infestans PITG_10282 N 0.794
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.794
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.794
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.783
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.783
SB01G003790 Sorghum bicolor Sb01g003790 N 0.783
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.783
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.783
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.779
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.779
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.779
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.768
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.768
TA13725 Theileria annulata TA13725 N 0.768
ppa013407m Prunus persica ppa013407m N 0.768
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.768
29868.m000351 Ricinus communis 29868.m000351 N 0.768
ppa013405m Prunus persica ppa013405m N 0.768
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.768
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.768
ENSCHOG00000013886 Choloepus hoffmanni ENSCHOG00000013886 N 0.768
MDP0000185506 Malus x domestica MDP0000185506 N 0.768
PK21780.1 Cannabis sativa PK21780.1 N 0.768
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.768
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.768
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.765
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.754
DDB_G0286297 Dictyostelium discoideum DDB_G0286297 N 0.754
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.754
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.754
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.754
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.754
PFL1200c Plasmodium falciparum PFL1200c N 0.739
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.739
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.739
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.739
PVX_123875 Plasmodium vivax PVX_123875 N 0.739
NCLIV_001260 Neospora caninum NCLIV_001260 N 0.735
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.735
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.735
GP3.080340 Batrachochytrium dendrobatidis GP3.080340 N 0.735
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.735
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.725
EDO06533.1 Babesia bovis EDO06533.1 N 0.725
PY07239 Plasmodium yoelii PY07239 N 0.725
MDP0000916880 Malus x domestica MDP0000916880 N 0.725
TP02_0539 Theileria parva TP02_0539 N 0.725
TGME49_105010 Toxoplasma gondii TGME49_105010 N 0.721
TGGT1_042490 Toxoplasma gondii TGGT1_042490 N 0.721
TGVEG_106330 Toxoplasma gondii TGVEG_106330 N 0.721
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.710
32497 Aureococcus anophagefferens 32497 N 0.707