CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PY07239
(
Plasmodium yoelii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PY07239
T47620_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PY07239
RRM
29
95
ILRNLPYKITADELYDIFGKYGTVRQIRKGNSEGTRGTSFVVYDDIYDAKNALDHLSGFNVAGRYLV
Links
Other
RRM
family RBPs
Other
Plasmodium yoelii
RBPs
92 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PBANKA_143980
Plasmodium berghei
PBANKA_143980
N
0.913
PKH_144160
Plasmodium knowlesi
PKH_144160
N
0.912
PFL1200c
Plasmodium falciparum
PFL1200c
N
0.912
PVX_123875
Plasmodium vivax
PVX_123875
N
0.912
PCHAS_144180
Plasmodium chabaudi
PCHAS_144180
N
0.899
EDO06533.1
Babesia bovis
EDO06533.1
N
0.853
TA13725
Theileria annulata
TA13725
N
0.853
TP02_0539
Theileria parva
TP02_0539
N
0.836
CMU_001200
Cryptosporidium muris
CMU_001200
N
0.794
estExt_fgenesh1_pg.C_1580052
Nematostella vectensis
estExt_fgenesh1_pg.C_1580052
N
0.765
CPIJ008576
Culex quinquefasciatus
CPIJ008576
N
0.750
DGIL_AUG5s10565g5t1
Acyrtosiphon pisum
DGIL_AUG5s10565g5t1
N
0.750
CpipJ_CPIJ008576
Culex pipiens
CpipJ_CPIJ008576
N
0.750
nasonia_NCBI_hmm146063
Nasonia vitripennis
nasonia_NCBI_hmm146063
N
0.750
nasonia_NCBI_hmm648054
Nasonia vitripennis
nasonia_NCBI_hmm648054
N
0.750
AGAP002780
Anopheles gambiae
AGAP002780
N
0.750
amel4_ncbi_hmm5835
Tribolium castaneum
amel4_ncbi_hmm5835
N
0.750
AAEL005909
Aedes aegypti
AAEL005909
N
0.750
amel4_ncbi_hmm5835
Apis mellifera
amel4_ncbi_hmm5835
N
0.750
e_gw1.13.49.1
Emiliania huxleyi
e_gw1.13.49.1
N
0.739
ENSPPYG00000012603
Pongo pygmaeus
ENSPPYG00000012603
N
0.735
XM_001098393.1
Macaca mulatta
ENSMMUG00000001282
N
0.735
ENSLAFG00000029423
Loxodonta africana
ENSLAFG00000029423
N
0.735
SF3B14
Gallus gallus
ENSGALG00000016501
N
0.735
AC008073.5
Homo sapiens
ENSG00000115128
N
0.735
ENSMGAG00000014057
Meleagris gallopavo
ENSMGAG00000014057
N
0.735
ENSMLUG00000002473
Myotis lucifugus
ENSMLUG00000002473
N
0.735
ENSOANG00000007627
Ornithorhynchus anatinus
ENSOANG00000007627
N
0.735
0610009D07Rik
Mus musculus
ENSMUSG00000037361
N
0.735
XM_515324.2
Pan troglodytes
ENSPTRG00000011709
N
0.735
ENSOCUG00000022008
Oryctolagus cuniculus
ENSOCUG00000022008
N
0.735
ENSSSCG00000008587
Sus scrofa
ENSSSCG00000008587
N
0.735
ENSTRUG00000006551
Takifugu rubripes
ENSTRUG00000006551
N
0.735
ENSTSYG00000013978
Tarsius syrichta
ENSTSYG00000013978
N
0.735
ENSTTRG00000013430
Tursiops truncatus
ENSTTRG00000013430
N
0.735
ENSVPAG00000005546
Vicugna pacos
ENSVPAG00000005546
N
0.735
ENSTNIG00000009719
Tetraodon nigroviridis
ENSTNIG00000009719
N
0.735
SF3B14
Taeniopygia guttata
ENSTGUG00000013191
N
0.735
ENSSARG00000011902
Sorex araneus
ENSSARG00000011902
N
0.735
ENSFCAG00000004304
Felis catus
ENSFCAG00000004304
N
0.735
ENSTBEG00000012532
Tupaia belangeri
ENSTBEG00000012532
N
0.735
ENSPVAG00000011346
Pteropus vampyrus
ENSPVAG00000011346
N
0.735
ENSCHOG00000000689
Choloepus hoffmanni
ENSCHOG00000000689
N
0.735
XM_532889.2
Canis familiaris
ENSCAFG00000003957
N
0.735
Ame_R001592
Ailuropoda melanoleuca
Ame_R001592
N
0.735
LOC100056247
Equus caballus
ENSECAG00000015618
N
0.735
Q2KIQ7_BOVIN
Bos taurus
ENSBTAG00000003407
N
0.735
SPRG_00106
Saprolegnia parasitica
SPRG_00106
N
0.735
ENSACAG00000011677
Anolis carolinensis
ENSACAG00000011677
N
0.735
LOC100386467
Callithrix jacchus
ENSCJAG00000007716
N
0.735
PHUM617060
Pediculus humanus
PHUM617060
N
0.735
0610009D07Rik
Dipodomys ordii
ENSDORG00000009772
N
0.735
ENSDNOG00000007148
Dasypus novemcinctus
ENSDNOG00000007148
N
0.735
sf3b14
Danio rerio
ENSDARG00000009753
N
0.735
ENSCPOG00000008016
Cavia porcellus
ENSCPOG00000008016
N
0.735
GJ12004
Drosophila virilis
FBgn0199256
N
0.725
GE20495
Drosophila yakuba
FBgn0068445
N
0.725
GK17258
Drosophila willistoni
FBgn0219257
N
0.725
GD13137
Drosophila simulans
FBgn0184859
N
0.725
estExt_fgenesh1_kg.C_20004
Daphnia pulex
estExt_fgenesh1_kg.C_20004
N
0.725
GA12181-RA
Drosophila pseudoobscura
FBgn0072229
N
0.725
GH16287
Drosophila grimshawi
FBgn0123758
N
0.725
GG14070
Drosophila erecta
FBgn0106332
N
0.725
GF10910
Drosophila ananassae
FBgn0087950
N
0.725
GI13232
Drosophila mojavensis
FBgn0135989
N
0.725
GL22529
Drosophila persimilis
FBgn0160121
N
0.725
CG13298
Drosophila melanogaster
FBgn0035692
N
0.725
GM13852
Drosophila sechellia
FBgn0168783
N
0.725
ISCW024082
Ixodes scapularis
ISCW024082
N
0.721
ENSGACG00000004803
Gasterosteus aculeatus
ENSGACG00000004803
N
0.721
estExt_GenewiseH_1.C_6800062
Branchiostoma floridae
estExt_GenewiseH_1.C_6800062
N
0.721
ENSORLG00000015955
Oryzias latipes
ENSORLG00000015955
N
0.721
sf3b14
Xenopus tropicalis
ENSXETG00000018204
N
0.721
s_454910
Phytophthora sojae
s_454910
N
0.710
THAPSDRAFT_20086
Thalassiosira pseudonana
Thaps20086
N
0.710
TGVEG_106330
Toxoplasma gondii
TGVEG_106330
N
0.710
TGME49_105010
Toxoplasma gondii
TGME49_105010
N
0.710
NCLIV_001260
Neospora caninum
NCLIV_001260
N
0.710
estExt_fgenesh1_pg.C_130126
Phytophthora capsici
estExt_fgenesh1_pg.C_130126
N
0.710
PITG_10282
Phytophthora infestans
PITG_10282
N
0.710
TGGT1_042490
Toxoplasma gondii
TGGT1_042490
N
0.710
estExt_fgenesh2_kg.C_sca_670005
Lottia gigantea
estExt_fgenesh2_kg.C_sca_670005
N
0.706
estExt_fgenesh1_pg.C_2760028
Capitella teleta
estExt_fgenesh1_pg.C_2760028
N
0.706
68671
Helobdella robusta
68671
N
0.706
ENSCSAVG00000008970
Ciona savignyi
ENSCSAVG00000008970
N
0.706
XM_001364269.1
Monodelphis domestica
ENSMODG00000002144
N
0.706
estExt_fgenesh2_pg.C_240194
Selaginella moellendorfii
estExt_fgenesh2_pg.C_240194
N
0.706
AAH57709
Xenopus laevis
AAH57709
N
0.706
LOC_Os03g59710
Oryza sativa
LOC_Os03g59710
N
0.706
BGIOSIBCE013412
Oryza indica
BGIOSIBCE013412
N
0.706
ENSCING00000012689
Ciona intestinalis
ENSCING00000012689
N
0.706
Minc01156
Meloidogyne incognita
Minc01156
N
0.706