CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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KHSRP
(
Myotis lucifugus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSMLUG00000015543
T19047_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHSRP
M342_0.6
Homo sapiens
Sequence logo not available
CnsCyUCC
RIP-chip
Cook et al.(2011)
906_17437629.3
0.848
KHSRP
M341_0.6
Homo sapiens
Sequence logo not available
nUGUrUrU
RIP-chip
Cook et al.(2011)
906_17437629.2
0.848
KHSRP
M340_0.6
Homo sapiens
Sequence logo not available
UwUAUUUw
RIP-chip
Cook et al.(2011)
906_17437629.1
0.848
KHSRP
M339_0.6
Homo sapiens
Sequence logo not available
UAUUUAUw
RIP-chip
Cook et al.(2011)
906_17437629
0.848
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMLUP00000014169
KH
100
125
XSGGLPERSVSLTGASESVQKAKMML
ENSMLUP00000014169
KH
152
216
VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMV
ENSMLUP00000014169
KH
241
303
GIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARII
ENSMLUP00000014169
KH
343
408
EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLI
Links
Other
KH
family RBPs
Other
Myotis lucifugus
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
s_439399
Phytophthora sojae
s_439399
N
0.000
s_439439
Phytophthora sojae
s_439439
N
0.000
s_441375
Phytophthora sojae
s_441375
N
0.000
s_443293
Phytophthora sojae
s_443293
N
0.000
s_444614
Phytophthora sojae
s_444614
N
0.000
s_445357
Phytophthora sojae
s_445357
N
0.000
s_445365
Phytophthora sojae
s_445365
N
0.000
s_447446
Phytophthora sojae
s_447446
N
0.000
s_448031
Phytophthora sojae
s_448031
N
0.000
s_448313
Phytophthora sojae
s_448313
N
0.000
s_449144
Phytophthora sojae
s_449144
N
0.000
s_449190
Phytophthora sojae
s_449190
N
0.000
s_449199
Phytophthora sojae
s_449199
N
0.000
s_449341
Phytophthora sojae
s_449341
N
0.000
s_450243
Phytophthora sojae
s_450243
N
0.000
s_450687
Phytophthora sojae
s_450687
N
0.000
s_450711
Phytophthora sojae
s_450711
N
0.000
s_450906
Phytophthora sojae
s_450906
N
0.000
s_452288
Phytophthora sojae
s_452288
N
0.000
s_452631
Phytophthora sojae
s_452631
N
0.000
s_452859
Phytophthora sojae
s_452859
N
0.000
s_452881
Phytophthora sojae
s_452881
N
0.000
s_456718
Phytophthora sojae
s_456718
N
0.000
s_459630
Phytophthora sojae
s_459630
N
0.000
s_460521
Phytophthora sojae
s_460521
N
0.000
s_462937
Phytophthora sojae
s_462937
N
0.000
s_464769
Phytophthora sojae
s_464769
N
0.000
s_464794
Phytophthora sojae
s_464794
N
0.000
s_466510
Phytophthora sojae
s_466510
N
0.000
s_466924
Phytophthora sojae
s_466924
N
0.000
s_467750
Phytophthora sojae
s_467750
N
0.000
s_468458
Phytophthora sojae
s_468458
N
0.000
s_469883
Phytophthora sojae
s_469883
N
0.000
s_470592
Phytophthora sojae
s_470592
N
0.000
s_472467
Phytophthora sojae
s_472467
N
0.000
s_472860
Phytophthora sojae
s_472860
N
0.000
s_473273
Phytophthora sojae
s_473273
N
0.000
s_476188
Phytophthora sojae
s_476188
N
0.000
s_476468
Phytophthora sojae
s_476468
N
0.000
s_477289
Phytophthora sojae
s_477289
N
0.000
s_477533
Phytophthora sojae
s_477533
N
0.000
s_477577
Phytophthora sojae
s_477577
N
0.000
s_516788
Phytophthora sojae
s_516788
N
0.000