KHSRP (Gasterosteus aculeatus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSGACG00000018990 T18853_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		0.860
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		0.860
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		0.860
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		0.860
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000025105 KH 98 160
ENSGACP00000025105 KH 178 242
ENSGACP00000025105 KH 263 325
ENSGACP00000025105 KH 368 433

Links

Other KH family RBPs
Other Gasterosteus aculeatus RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
KHSRP Tetraodon nigroviridis ENSTNIG00000014067 I 0.895
KHSRP Takifugu rubripes ENSTRUG00000010395 I 0.891
KHSRP Danio rerio ENSDARG00000026489 I 0.887
KHSRP Oryzias latipes ENSORLG00000011882 I 0.879
KHSRP Anolis carolinensis ENSACAG00000015398 I 0.864
Ame_R016412 Ailuropoda melanoleuca Ame_R016412 I 0.860
KHSRP Tursiops truncatus ENSTTRG00000010390 I 0.860
KHSRP Spermophilus tridecemlineatus ENSSTOG00000002371 I 0.860
ENSPPYG00000009454 Pongo pygmaeus ENSPPYG00000009454 I 0.860
KHSRP Pan troglodytes ENSPTRG00000010364 I 0.860
KHSRP Sus scrofa ENSSSCG00000013538 I 0.860
KHSRP Canis familiaris ENSCAFG00000018667 I 0.860
KHSRP Homo sapiens ENSG00000088247 D 0.860
KHSRP Gasterosteus aculeatus ENSGACG00000012422 I 0.860
KHSRP Felis catus ENSFCAG00000003731 I 0.860
LOC100065608 Equus caballus ENSECAG00000018305 I 0.860
KHSRP Callithrix jacchus ENSCJAG00000016627 I 0.860
KHSRP Cavia porcellus ENSCPOG00000005140 I 0.860
LOC505564 Bos taurus ENSBTAG00000021018 I 0.860
KHSRP Gorilla gorilla ENSGGOG00000007028 I 0.860
KHSRP Macaca mulatta ENSMMUG00000005597 I 0.860
AAN77160 Xenopus laevis AAN77160 I 0.856
KHSRP Pteropus vampyrus ENSPVAG00000007251 I 0.856
Khsrp Mus musculus ENSMUSG00000007670 I 0.856
KHSRP Ochotona princeps ENSOPRG00000010594 I 0.856
KHSRP Loxodonta africana ENSLAFG00000002426 I 0.856
Khsrp Dipodomys ordii ENSDORG00000002447 I 0.856
AAI69923 Xenopus laevis AAI69923 I 0.856
KHSRP Microcebus murinus ENSMICG00000007863 I 0.852
AAI61696 Xenopus laevis AAI61696 I 0.852
KHSRP Macropus eugenii ENSMEUG00000016601 I 0.825
KHSRP Monodelphis domestica ENSMODG00000001952 I 0.813
KHSRP Dasypus novemcinctus ENSDNOG00000009590 I 0.801
KHSRP Echinops telfairi ENSETEG00000004793 I 0.767
khsrp Xenopus tropicalis ENSXETG00000021862 I 0.759
KHSRP Ornithorhynchus anatinus ENSOANG00000000261 I 0.756
ENSPPYG00000019172 Pongo pygmaeus ENSPPYG00000019172 I 0.751
KHSRP Procavia capensis ENSPCAG00000000246 I 0.720
KHSRP Myotis lucifugus ENSMLUG00000015543 I 0.720
AAH44277 Xenopus laevis AAH44277 I 0.712
fubp1 Danio rerio ENSDARG00000029248 I 0.712
FUBP1 Homo sapiens ENSG00000162613 I 0.708
FUBP1 Macaca mulatta ENSMMUG00000002899 I 0.708
ENSPPYG00000001219 Pongo pygmaeus ENSPPYG00000001219 I 0.708
FUBP1 Pan troglodytes ENSPTRG00000000888 I 0.708
FUBP1 Gorilla gorilla ENSGGOG00000027554 I 0.708
Fubp1 Mus musculus ENSMUSG00000028034 I 0.704
FUBP1 Vicugna pacos ENSVPAG00000004709 I 0.704
FUBP1 Otolemur garnettii ENSOGAG00000014233 I 0.704
FUBP1 Tursiops truncatus ENSTTRG00000000096 I 0.704
FUBP1 Equus caballus ENSECAG00000010867 I 0.704
FUBP1 Procavia capensis ENSPCAG00000012617 I 0.704
FUBP1 Loxodonta africana ENSLAFG00000003273 I 0.704
FUBP1 Myotis lucifugus ENSMLUG00000014802 I 0.704
Fubp1 Dipodomys ordii ENSDORG00000016534 I 0.704
fubp1 Xenopus tropicalis ENSXETG00000013137 I 0.704
FUBP1 Ornithorhynchus anatinus ENSOANG00000009777 I 0.704
Q08DJ3_BOVIN Bos taurus ENSBTAG00000008926 I 0.704
ENSSSCG00000003767 Sus scrofa ENSSSCG00000003767 I 0.704
FUBP1 Cavia porcellus ENSCPOG00000002757 I 0.704
ENSSSCG00000003771 Sus scrofa ENSSSCG00000003771 I 0.704
FUBP1 Choloepus hoffmanni ENSCHOG00000008177 I 0.704
FUBP1 Callithrix jacchus ENSCJAG00000007062 I 0.704
FUBP1 Canis familiaris ENSCAFG00000020361 I 0.704
Q5ZHW0_CHICK Gallus gallus ENSGALG00000008939 I 0.703
Ame_R010564 Ailuropoda melanoleuca Ame_R010564 I 0.702
FUBP1 Spermophilus tridecemlineatus ENSSTOG00000014312 I 0.700
FUBP1 Meleagris gallopavo ENSMGAG00000009424 I 0.700