KHSRP (Danio rerio)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSDARG00000026489 T18622_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		0.914
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		0.914
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		0.914
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		0.914
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000032748 KH 108 170
ENSDARP00000032748 KH 194 258
ENSDARP00000032748 KH 295 357
ENSDARP00000032748 KH 404 469

Links

Other KH family RBPs
Other Danio rerio RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
KHSRP Gorilla gorilla ENSGGOG00000007028 I 0.914
Khsrp Mus musculus ENSMUSG00000007670 I 0.914
KHSRP Anolis carolinensis ENSACAG00000015398 I 0.914
KHSRP Callithrix jacchus ENSCJAG00000016627 I 0.914
KHSRP Macaca mulatta ENSMMUG00000005597 I 0.914
KHSRP Tursiops truncatus ENSTTRG00000010390 I 0.914
KHSRP Sus scrofa ENSSSCG00000013538 I 0.914
KHSRP Spermophilus tridecemlineatus ENSSTOG00000002371 I 0.914
KHSRP Pteropus vampyrus ENSPVAG00000007251 I 0.914
KHSRP Cavia porcellus ENSCPOG00000005140 I 0.914
Ame_R016412 Ailuropoda melanoleuca Ame_R016412 I 0.914
KHSRP Canis familiaris ENSCAFG00000018667 I 0.914
KHSRP Pan troglodytes ENSPTRG00000010364 I 0.914
ENSPPYG00000009454 Pongo pygmaeus ENSPPYG00000009454 I 0.914
LOC100065608 Equus caballus ENSECAG00000018305 I 0.914
KHSRP Homo sapiens ENSG00000088247 D 0.914
KHSRP Felis catus ENSFCAG00000003731 I 0.914
LOC505564 Bos taurus ENSBTAG00000021018 I 0.914
KHSRP Ochotona princeps ENSOPRG00000010594 I 0.911
KHSRP Microcebus murinus ENSMICG00000007863 I 0.911
Khsrp Dipodomys ordii ENSDORG00000002447 I 0.911
KHSRP Loxodonta africana ENSLAFG00000002426 I 0.911
AAN77160 Xenopus laevis AAN77160 I 0.895
AAI69923 Xenopus laevis AAI69923 I 0.895
AAI61696 Xenopus laevis AAI61696 I 0.891
KHSRP Gasterosteus aculeatus ENSGACG00000018990 I 0.887
KHSRP Gasterosteus aculeatus ENSGACG00000012422 I 0.872
KHSRP Macropus eugenii ENSMEUG00000016601 I 0.872
KHSRP Monodelphis domestica ENSMODG00000001952 I 0.852
KHSRP Takifugu rubripes ENSTRUG00000010395 I 0.840
KHSRP Dasypus novemcinctus ENSDNOG00000009590 I 0.839
KHSRP Oryzias latipes ENSORLG00000011882 I 0.837
KHSRP Tetraodon nigroviridis ENSTNIG00000014067 I 0.833
KHSRP Echinops telfairi ENSETEG00000004793 I 0.821
KHSRP Ornithorhynchus anatinus ENSOANG00000000261 I 0.806
khsrp Xenopus tropicalis ENSXETG00000021862 I 0.802
ENSPPYG00000019172 Pongo pygmaeus ENSPPYG00000019172 I 0.790
KHSRP Procavia capensis ENSPCAG00000000246 I 0.767
KHSRP Myotis lucifugus ENSMLUG00000015543 I 0.767
FUBP1 Tursiops truncatus ENSTTRG00000000096 I 0.739
FUBP1 Vicugna pacos ENSVPAG00000004709 I 0.739
Q08DJ3_BOVIN Bos taurus ENSBTAG00000008926 I 0.739
FUBP1 Ornithorhynchus anatinus ENSOANG00000009777 I 0.739
FUBP1 Loxodonta africana ENSLAFG00000003273 I 0.739
FUBP1 Callithrix jacchus ENSCJAG00000007062 I 0.739
FUBP1 Cavia porcellus ENSCPOG00000002757 I 0.739
FUBP1 Equus caballus ENSECAG00000010867 I 0.739
Fubp1 Dipodomys ordii ENSDORG00000016534 I 0.739
FUBP1 Myotis lucifugus ENSMLUG00000014802 I 0.739
FUBP1 Choloepus hoffmanni ENSCHOG00000008177 I 0.739
FUBP1 Canis familiaris ENSCAFG00000020361 I 0.739
ENSSSCG00000003767 Sus scrofa ENSSSCG00000003767 I 0.739
ENSSSCG00000003771 Sus scrofa ENSSSCG00000003771 I 0.739
FUBP1 Procavia capensis ENSPCAG00000012617 I 0.739
FUBP1 Otolemur garnettii ENSOGAG00000014233 I 0.739
Fubp1 Mus musculus ENSMUSG00000028034 I 0.739
Ame_R010564 Ailuropoda melanoleuca Ame_R010564 I 0.736
FUBP1 Pan troglodytes ENSPTRG00000000888 I 0.735
FUBP1 Gorilla gorilla ENSGGOG00000027554 I 0.735
FUBP1 Homo sapiens ENSG00000162613 I 0.735
ENSPPYG00000001219 Pongo pygmaeus ENSPPYG00000001219 I 0.735
FUBP1 Macaca mulatta ENSMMUG00000002899 I 0.735
FUBP1 Spermophilus tridecemlineatus ENSSTOG00000014312 I 0.732
FUBP1 Anolis carolinensis ENSACAG00000006310 I 0.732
FUBP1 Tarsius syrichta ENSTSYG00000000148 I 0.732
Q5ZHW0_CHICK Gallus gallus ENSGALG00000008939 I 0.730
FUBP1 Meleagris gallopavo ENSMGAG00000009424 I 0.728
fubp1 Xenopus tropicalis ENSXETG00000013137 I 0.724
AAH44277 Xenopus laevis AAH44277 I 0.720
AAI69815 Xenopus laevis AAI69815 I 0.720
AAH70981 Xenopus laevis AAH70981 I 0.720
FUBP1 Taeniopygia guttata ENSTGUG00000006841 I 0.719
fubp1 Danio rerio ENSDARG00000029248 I 0.708
AAN77161 Xenopus laevis AAN77161 I 0.700
ENSTRUG00000004615 Takifugu rubripes ENSTRUG00000004615 I 0.700