Khsrp (Dipodomys ordii)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSDORG00000002447 T18669_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		0.996
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		0.996
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		0.996
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		0.996
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000002299 KH 142 204
ENSDORP00000002299 KH 231 295
ENSDORP00000002299 KH 320 382
ENSDORP00000002299 KH 422 487

Links

Other KH family RBPs
Other Dipodomys ordii RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
KHSRP Gorilla gorilla ENSGGOG00000007028 I 0.996
KHSRP Tursiops truncatus ENSTTRG00000010390 I 0.996
Ame_R016412 Ailuropoda melanoleuca Ame_R016412 I 0.996
KHSRP Spermophilus tridecemlineatus ENSSTOG00000002371 I 0.996
KHSRP Sus scrofa ENSSSCG00000013538 I 0.996
ENSPPYG00000009454 Pongo pygmaeus ENSPPYG00000009454 I 0.996
KHSRP Pan troglodytes ENSPTRG00000010364 I 0.996
KHSRP Macaca mulatta ENSMMUG00000005597 I 0.996
LOC505564 Bos taurus ENSBTAG00000021018 I 0.996
LOC100065608 Equus caballus ENSECAG00000018305 I 0.996
KHSRP Cavia porcellus ENSCPOG00000005140 I 0.996
KHSRP Callithrix jacchus ENSCJAG00000016627 I 0.996
KHSRP Felis catus ENSFCAG00000003731 I 0.996
KHSRP Canis familiaris ENSCAFG00000018667 I 0.996
KHSRP Homo sapiens ENSG00000088247 D 0.996
Khsrp Mus musculus ENSMUSG00000007670 I 0.992
KHSRP Anolis carolinensis ENSACAG00000015398 I 0.992
KHSRP Pteropus vampyrus ENSPVAG00000007251 I 0.992
KHSRP Loxodonta africana ENSLAFG00000002426 I 0.992
KHSRP Ochotona princeps ENSOPRG00000010594 I 0.988
KHSRP Microcebus murinus ENSMICG00000007863 I 0.981
KHSRP Macropus eugenii ENSMEUG00000016601 I 0.949
KHSRP Monodelphis domestica ENSMODG00000001952 I 0.930
AAI69923 Xenopus laevis AAI69923 I 0.922
AAN77160 Xenopus laevis AAN77160 I 0.922
AAI61696 Xenopus laevis AAI61696 I 0.918
KHSRP Danio rerio ENSDARG00000026489 I 0.911
KHSRP Dasypus novemcinctus ENSDNOG00000009590 I 0.900
KHSRP Ornithorhynchus anatinus ENSOANG00000000261 I 0.888
KHSRP Echinops telfairi ENSETEG00000004793 I 0.887
KHSRP Gasterosteus aculeatus ENSGACG00000012422 I 0.868
KHSRP Gasterosteus aculeatus ENSGACG00000018990 I 0.856
ENSPPYG00000019172 Pongo pygmaeus ENSPPYG00000019172 I 0.852
KHSRP Myotis lucifugus ENSMLUG00000015543 I 0.844
KHSRP Procavia capensis ENSPCAG00000000246 I 0.840
khsrp Xenopus tropicalis ENSXETG00000021862 I 0.833
KHSRP Takifugu rubripes ENSTRUG00000010395 I 0.805
KHSRP Oryzias latipes ENSORLG00000011882 I 0.805
KHSRP Tetraodon nigroviridis ENSTNIG00000014067 I 0.798
ENSPPYG00000001219 Pongo pygmaeus ENSPPYG00000001219 I 0.770
FUBP1 Gorilla gorilla ENSGGOG00000027554 I 0.770
FUBP1 Macaca mulatta ENSMMUG00000002899 I 0.770
FUBP1 Homo sapiens ENSG00000162613 I 0.770
FUBP1 Pan troglodytes ENSPTRG00000000888 I 0.770
FUBP1 Procavia capensis ENSPCAG00000012617 I 0.767
FUBP1 Callithrix jacchus ENSCJAG00000007062 I 0.767
FUBP1 Loxodonta africana ENSLAFG00000003273 I 0.767
Fubp1 Mus musculus ENSMUSG00000028034 I 0.767
FUBP1 Cavia porcellus ENSCPOG00000002757 I 0.767
FUBP1 Equus caballus ENSECAG00000010867 I 0.767
FUBP1 Vicugna pacos ENSVPAG00000004709 I 0.767
FUBP1 Canis familiaris ENSCAFG00000020361 I 0.767
Q08DJ3_BOVIN Bos taurus ENSBTAG00000008926 I 0.767
FUBP1 Ornithorhynchus anatinus ENSOANG00000009777 I 0.767
ENSSSCG00000003771 Sus scrofa ENSSSCG00000003771 I 0.767
Fubp1 Dipodomys ordii ENSDORG00000016534 I 0.767
FUBP1 Myotis lucifugus ENSMLUG00000014802 I 0.767
FUBP1 Tursiops truncatus ENSTTRG00000000096 I 0.767
FUBP1 Otolemur garnettii ENSOGAG00000014233 I 0.767
ENSSSCG00000003767 Sus scrofa ENSSSCG00000003767 I 0.767
Ame_R010564 Ailuropoda melanoleuca Ame_R010564 I 0.764
FUBP1 Choloepus hoffmanni ENSCHOG00000008177 I 0.763
KHSRP Vicugna pacos ENSVPAG00000010837 I 0.763
FUBP1 Spermophilus tridecemlineatus ENSSTOG00000014312 I 0.759
FUBP1 Tarsius syrichta ENSTSYG00000000148 I 0.759
FUBP1 Anolis carolinensis ENSACAG00000006310 I 0.759
Q5ZHW0_CHICK Gallus gallus ENSGALG00000008939 I 0.757
FUBP1 Meleagris gallopavo ENSMGAG00000009424 I 0.755
fubp1 Xenopus tropicalis ENSXETG00000013137 I 0.751
AAH44277 Xenopus laevis AAH44277 I 0.747
FUBP1 Taeniopygia guttata ENSTGUG00000006841 I 0.745
AAH70981 Xenopus laevis AAH70981 I 0.743
AAI69815 Xenopus laevis AAI69815 I 0.743
AAN77161 Xenopus laevis AAN77161 I 0.724
ENSTRUG00000004615 Takifugu rubripes ENSTRUG00000004615 I 0.712
fubp1 Danio rerio ENSDARG00000029248 I 0.712
ENSORLG00000003540 Oryzias latipes ENSORLG00000003540 I 0.712
ENSGACG00000016563 Gasterosteus aculeatus ENSGACG00000016563 I 0.710
FUBP1 Oryctolagus cuniculus ENSOCUG00000002225 I 0.707