CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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KHSRP
(
Myotis lucifugus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSMLUG00000015543
T19047_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHSRP
M342_0.6
Homo sapiens
Sequence logo not available
CnsCyUCC
RIP-chip
Cook et al.(2011)
906_17437629.3
0.848
KHSRP
M341_0.6
Homo sapiens
Sequence logo not available
nUGUrUrU
RIP-chip
Cook et al.(2011)
906_17437629.2
0.848
KHSRP
M340_0.6
Homo sapiens
Sequence logo not available
UwUAUUUw
RIP-chip
Cook et al.(2011)
906_17437629.1
0.848
KHSRP
M339_0.6
Homo sapiens
Sequence logo not available
UAUUUAUw
RIP-chip
Cook et al.(2011)
906_17437629
0.848
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMLUP00000014169
KH
100
125
XSGGLPERSVSLTGASESVQKAKMML
ENSMLUP00000014169
KH
152
216
VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMV
ENSMLUP00000014169
KH
241
303
GIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARII
ENSMLUP00000014169
KH
343
408
EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLI
Links
Other
KH
family RBPs
Other
Myotis lucifugus
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
KHSRP
Procavia capensis
ENSPCAG00000000246
I
0.986
KHSRP
Ornithorhynchus anatinus
ENSOANG00000000261
I
0.935
KHSRP
Callithrix jacchus
ENSCJAG00000016627
I
0.865
KHSRP
Tursiops truncatus
ENSTTRG00000010390
I
0.848
KHSRP
Spermophilus tridecemlineatus
ENSSTOG00000002371
I
0.848
Ame_R016412
Ailuropoda melanoleuca
Ame_R016412
I
0.848
KHSRP
Cavia porcellus
ENSCPOG00000005140
I
0.848
KHSRP
Sus scrofa
ENSSSCG00000013538
I
0.848
LOC505564
Bos taurus
ENSBTAG00000021018
I
0.848
KHSRP
Macaca mulatta
ENSMMUG00000005597
I
0.848
LOC100065608
Equus caballus
ENSECAG00000018305
I
0.848
KHSRP
Homo sapiens
ENSG00000088247
D
0.848
KHSRP
Gorilla gorilla
ENSGGOG00000007028
I
0.848
ENSPPYG00000009454
Pongo pygmaeus
ENSPPYG00000009454
I
0.848
KHSRP
Canis familiaris
ENSCAFG00000018667
I
0.848
KHSRP
Pan troglodytes
ENSPTRG00000010364
I
0.848
KHSRP
Felis catus
ENSFCAG00000003731
I
0.848
KHSRP
Loxodonta africana
ENSLAFG00000002426
I
0.844
Khsrp
Dipodomys ordii
ENSDORG00000002447
I
0.844
KHSRP
Anolis carolinensis
ENSACAG00000015398
I
0.844
Khsrp
Mus musculus
ENSMUSG00000007670
I
0.844
KHSRP
Pteropus vampyrus
ENSPVAG00000007251
I
0.844
KHSRP
Ochotona princeps
ENSOPRG00000010594
I
0.840
KHSRP
Microcebus murinus
ENSMICG00000007863
I
0.833
KHSRP
Macropus eugenii
ENSMEUG00000016601
I
0.802
KHSRP
Monodelphis domestica
ENSMODG00000001952
I
0.782
AAI69923
Xenopus laevis
AAI69923
I
0.778
AAN77160
Xenopus laevis
AAN77160
I
0.778
AAI61696
Xenopus laevis
AAI61696
I
0.774
KHSRP
Danio rerio
ENSDARG00000026489
I
0.767
KHSRP
Dasypus novemcinctus
ENSDNOG00000009590
I
0.766
KHSRP
Echinops telfairi
ENSETEG00000004793
I
0.743
KHSRP
Gasterosteus aculeatus
ENSGACG00000012422
I
0.743
ENSPPYG00000019172
Pongo pygmaeus
ENSPPYG00000019172
I
0.724
KHSRP
Gasterosteus aculeatus
ENSGACG00000018990
I
0.720