KHSRP (Gasterosteus aculeatus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSGACG00000012422 T18839_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		0.872
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		0.872
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		0.872
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		0.872
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000016426 KH 101 163
ENSGACP00000016426 KH 189 253
ENSGACP00000016426 KH 278 340
ENSGACP00000016426 KH 380 445

Links

Other KH family RBPs
Other Gasterosteus aculeatus RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
KHSRP Anolis carolinensis ENSACAG00000015398 I 0.875
KHSRP Ochotona princeps ENSOPRG00000010594 I 0.872
KHSRP Pan troglodytes ENSPTRG00000010364 I 0.872
KHSRP Macaca mulatta ENSMMUG00000005597 I 0.872
Ame_R016412 Ailuropoda melanoleuca Ame_R016412 I 0.872
KHSRP Tursiops truncatus ENSTTRG00000010390 I 0.872
KHSRP Sus scrofa ENSSSCG00000013538 I 0.872
ENSPPYG00000009454 Pongo pygmaeus ENSPPYG00000009454 I 0.872
KHSRP Spermophilus tridecemlineatus ENSSTOG00000002371 I 0.872
KHSRP Canis familiaris ENSCAFG00000018667 I 0.872
LOC505564 Bos taurus ENSBTAG00000021018 I 0.872
KHSRP Gorilla gorilla ENSGGOG00000007028 I 0.872
KHSRP Felis catus ENSFCAG00000003731 I 0.872
KHSRP Callithrix jacchus ENSCJAG00000016627 I 0.872
LOC100065608 Equus caballus ENSECAG00000018305 I 0.872
KHSRP Danio rerio ENSDARG00000026489 I 0.872
KHSRP Homo sapiens ENSG00000088247 D 0.872
KHSRP Cavia porcellus ENSCPOG00000005140 I 0.872
KHSRP Pteropus vampyrus ENSPVAG00000007251 I 0.868
KHSRP Loxodonta africana ENSLAFG00000002426 I 0.868
Khsrp Dipodomys ordii ENSDORG00000002447 I 0.868
Khsrp Mus musculus ENSMUSG00000007670 I 0.868
KHSRP Microcebus murinus ENSMICG00000007863 I 0.860
KHSRP Gasterosteus aculeatus ENSGACG00000018990 I 0.860
AAI61696 Xenopus laevis AAI61696 I 0.848
AAI69923 Xenopus laevis AAI69923 I 0.844
AAN77160 Xenopus laevis AAN77160 I 0.844
KHSRP Tetraodon nigroviridis ENSTNIG00000014067 I 0.829
KHSRP Takifugu rubripes ENSTRUG00000010395 I 0.829
KHSRP Oryzias latipes ENSORLG00000011882 I 0.825
KHSRP Macropus eugenii ENSMEUG00000016601 I 0.825
KHSRP Monodelphis domestica ENSMODG00000001952 I 0.813
KHSRP Dasypus novemcinctus ENSDNOG00000009590 I 0.808
KHSRP Ornithorhynchus anatinus ENSOANG00000000261 I 0.775
KHSRP Echinops telfairi ENSETEG00000004793 I 0.770
khsrp Xenopus tropicalis ENSXETG00000021862 I 0.767
ENSPPYG00000019172 Pongo pygmaeus ENSPPYG00000019172 I 0.759
KHSRP Myotis lucifugus ENSMLUG00000015543 I 0.743
KHSRP Procavia capensis ENSPCAG00000000246 I 0.739
FUBP1 Pan troglodytes ENSPTRG00000000888 I 0.732
FUBP1 Gorilla gorilla ENSGGOG00000027554 I 0.732
ENSPPYG00000001219 Pongo pygmaeus ENSPPYG00000001219 I 0.732
FUBP1 Homo sapiens ENSG00000162613 I 0.732
FUBP1 Macaca mulatta ENSMMUG00000002899 I 0.732
FUBP1 Callithrix jacchus ENSCJAG00000007062 I 0.728
FUBP1 Choloepus hoffmanni ENSCHOG00000008177 I 0.728
FUBP1 Canis familiaris ENSCAFG00000020361 I 0.728
ENSSSCG00000003771 Sus scrofa ENSSSCG00000003771 I 0.728
FUBP1 Equus caballus ENSECAG00000010867 I 0.728
FUBP1 Loxodonta africana ENSLAFG00000003273 I 0.728
Fubp1 Dipodomys ordii ENSDORG00000016534 I 0.728
ENSSSCG00000003767 Sus scrofa ENSSSCG00000003767 I 0.728
FUBP1 Myotis lucifugus ENSMLUG00000014802 I 0.728
Q08DJ3_BOVIN Bos taurus ENSBTAG00000008926 I 0.728
FUBP1 Cavia porcellus ENSCPOG00000002757 I 0.728
Fubp1 Mus musculus ENSMUSG00000028034 I 0.728
FUBP1 Tursiops truncatus ENSTTRG00000000096 I 0.728
FUBP1 Vicugna pacos ENSVPAG00000004709 I 0.728
fubp1 Xenopus tropicalis ENSXETG00000013137 I 0.728
FUBP1 Tarsius syrichta ENSTSYG00000000148 I 0.728
FUBP1 Otolemur garnettii ENSOGAG00000014233 I 0.728
FUBP1 Procavia capensis ENSPCAG00000012617 I 0.728
FUBP1 Ornithorhynchus anatinus ENSOANG00000009777 I 0.728
Ame_R010564 Ailuropoda melanoleuca Ame_R010564 I 0.725
FUBP1 Spermophilus tridecemlineatus ENSSTOG00000014312 I 0.724
FUBP1 Anolis carolinensis ENSACAG00000006310 I 0.724
fubp1 Danio rerio ENSDARG00000029248 I 0.720
Q5ZHW0_CHICK Gallus gallus ENSGALG00000008939 I 0.718
FUBP1 Meleagris gallopavo ENSMGAG00000009424 I 0.716
AAI69815 Xenopus laevis AAI69815 I 0.716
AAH70981 Xenopus laevis AAH70981 I 0.716
AAH44277 Xenopus laevis AAH44277 I 0.708
FUBP1 Taeniopygia guttata ENSTGUG00000006841 I 0.707
FUBP3 Tetraodon nigroviridis ENSTNIG00000005858 N 0.702
FUBP3 Cavia porcellus ENSCPOG00000010315 N 0.702
ENSORLG00000003540 Oryzias latipes ENSORLG00000003540 I 0.700
AAN77161 Xenopus laevis AAN77161 I 0.700