CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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KHSRP
(
Gasterosteus aculeatus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSGACG00000012422
T18839_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHSRP
M340_0.6
Homo sapiens
Sequence logo not available
UwUAUUUw
RIP-chip
Cook et al.(2011)
906_17437629.1
0.872
KHSRP
M339_0.6
Homo sapiens
Sequence logo not available
UAUUUAUw
RIP-chip
Cook et al.(2011)
906_17437629
0.872
KHSRP
M342_0.6
Homo sapiens
Sequence logo not available
CnsCyUCC
RIP-chip
Cook et al.(2011)
906_17437629.3
0.872
KHSRP
M341_0.6
Homo sapiens
Sequence logo not available
nUGUrUrU
RIP-chip
Cook et al.(2011)
906_17437629.2
0.872
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000016426
KH
101
163
TEEFSVPDSMVGLIIGRGGEQINKIQQESGCKVQIAPDSGGLPDRCVSLTGSQDCIENAKRLL
ENSGACP00000016426
KH
189
253
VHEMMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDASQGPNVDKPLRIIGDPYKVQQAEEMV
ENSGACP00000016426
KH
278
340
GMDIPVPRHSVGVVIGRNGEMIKKIQNDAGVRIQFKQDDGTSPEKIAHVSGPPDRCEHAAQII
ENSGACP00000016426
KH
380
445
ELTFSIPAHKCGLVIGRGGENVKSINQQTGAFVEISRQPPPNGDPNFKLFIIRGSPQQIDHAKQLI
Links
Other
KH
family RBPs
Other
Gasterosteus aculeatus
RBPs
77 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
KHSRP
Anolis carolinensis
ENSACAG00000015398
I
0.875
KHSRP
Ochotona princeps
ENSOPRG00000010594
I
0.872
KHSRP
Pan troglodytes
ENSPTRG00000010364
I
0.872
KHSRP
Macaca mulatta
ENSMMUG00000005597
I
0.872
Ame_R016412
Ailuropoda melanoleuca
Ame_R016412
I
0.872
KHSRP
Tursiops truncatus
ENSTTRG00000010390
I
0.872
KHSRP
Sus scrofa
ENSSSCG00000013538
I
0.872
ENSPPYG00000009454
Pongo pygmaeus
ENSPPYG00000009454
I
0.872
KHSRP
Spermophilus tridecemlineatus
ENSSTOG00000002371
I
0.872
KHSRP
Canis familiaris
ENSCAFG00000018667
I
0.872
LOC505564
Bos taurus
ENSBTAG00000021018
I
0.872
KHSRP
Gorilla gorilla
ENSGGOG00000007028
I
0.872
KHSRP
Felis catus
ENSFCAG00000003731
I
0.872
KHSRP
Callithrix jacchus
ENSCJAG00000016627
I
0.872
LOC100065608
Equus caballus
ENSECAG00000018305
I
0.872
KHSRP
Danio rerio
ENSDARG00000026489
I
0.872
KHSRP
Homo sapiens
ENSG00000088247
D
0.872
KHSRP
Cavia porcellus
ENSCPOG00000005140
I
0.872
KHSRP
Pteropus vampyrus
ENSPVAG00000007251
I
0.868
KHSRP
Loxodonta africana
ENSLAFG00000002426
I
0.868
Khsrp
Dipodomys ordii
ENSDORG00000002447
I
0.868
Khsrp
Mus musculus
ENSMUSG00000007670
I
0.868
KHSRP
Microcebus murinus
ENSMICG00000007863
I
0.860
KHSRP
Gasterosteus aculeatus
ENSGACG00000018990
I
0.860
AAI61696
Xenopus laevis
AAI61696
I
0.848
AAI69923
Xenopus laevis
AAI69923
I
0.844
AAN77160
Xenopus laevis
AAN77160
I
0.844
KHSRP
Tetraodon nigroviridis
ENSTNIG00000014067
I
0.829
KHSRP
Takifugu rubripes
ENSTRUG00000010395
I
0.829
KHSRP
Oryzias latipes
ENSORLG00000011882
I
0.825
KHSRP
Macropus eugenii
ENSMEUG00000016601
I
0.825
KHSRP
Monodelphis domestica
ENSMODG00000001952
I
0.813
KHSRP
Dasypus novemcinctus
ENSDNOG00000009590
I
0.808
KHSRP
Ornithorhynchus anatinus
ENSOANG00000000261
I
0.775
KHSRP
Echinops telfairi
ENSETEG00000004793
I
0.770
khsrp
Xenopus tropicalis
ENSXETG00000021862
I
0.767
ENSPPYG00000019172
Pongo pygmaeus
ENSPPYG00000019172
I
0.759
KHSRP
Myotis lucifugus
ENSMLUG00000015543
I
0.743
KHSRP
Procavia capensis
ENSPCAG00000000246
I
0.739
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.732
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.732
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.732
FUBP1
Homo sapiens
ENSG00000162613
I
0.732
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.732
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.728
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.728
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.728
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.728
FUBP1
Equus caballus
ENSECAG00000010867
I
0.728
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.728
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.728
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.728
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.728
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.728
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.728
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.728
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.728
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.728
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.728
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.728
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.728
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.728
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.728
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.725
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.724
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.724
fubp1
Danio rerio
ENSDARG00000029248
I
0.720
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.718
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.716
AAI69815
Xenopus laevis
AAI69815
I
0.716
AAH70981
Xenopus laevis
AAH70981
I
0.716
AAH44277
Xenopus laevis
AAH44277
I
0.708
FUBP1
Taeniopygia guttata
ENSTGUG00000006841
I
0.707
FUBP3
Tetraodon nigroviridis
ENSTNIG00000005858
N
0.702
FUBP3
Cavia porcellus
ENSCPOG00000010315
N
0.702
ENSORLG00000003540
Oryzias latipes
ENSORLG00000003540
I
0.700
AAN77161
Xenopus laevis
AAN77161
I
0.700