CpipJ_CPIJ016329 (Culex pipiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CpipJ_CPIJ016329 T29008_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ016329-RA RRM 6 74
CpipJ_CPIJ016329-RA RRM 276 346

Links

Other RRM family RBPs
Other Culex pipiens RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAG27092 Xenopus laevis AAG27092 I 0.000
AAH56659 Xenopus laevis AAH56659 I 0.000
AAH73361 Xenopus laevis AAH73361 I 0.000
AGAP006365 Anopheles gambiae AGAP006365 I 0.000
amel4_ncbi_hmm2170 Apis mellifera amel4_ncbi_hmm2170 I 0.000
Ame_R013073 Ailuropoda melanoleuca Ame_R013073 I 0.000
CBG18074 Caenorhabditis briggsae CBG18074 I 0.000
CJA17011 Caenorhabditis japonica CJA17011 I 0.000
CPIJ007339 Culex quinquefasciatus CPIJ007339 I 0.000
CpipJ_CPIJ007339 Culex pipiens CpipJ_CPIJ007339 I 0.000
CRE20368 Caenorhabditis remanei CRE20368 I 0.000
DGIL_AUG5s13034g4t1 Acyrtosiphon pisum DGIL_AUG5s13034g4t1 I 0.000
DGIL_AUG5s25g7t1 Acyrtosiphon pisum DGIL_AUG5s25g7t1 I 0.000
RBM8A_BOVIN Bos taurus ENSBTAG00000008369 I 0.000
RBM8A Canis familiaris ENSCAFG00000023172 I 0.000
ENSCING00000004877 Ciona intestinalis ENSCING00000004877 I 0.000
LOC100399389 Callithrix jacchus ENSCJAG00000002209 I 0.000
RBM8A Cavia porcellus ENSCPOG00000022453 I 0.000
ENSCSAVG00000005685 Ciona savignyi ENSCSAVG00000005685 I 0.000
rbm8a Danio rerio ENSDARG00000016516 I 0.000
Q6DTK7_HORSE Equus caballus ENSECAG00000022024 I 0.000
ENSETEG00000017932 Echinops telfairi ENSETEG00000017932 I 0.000
RBM8A Felis catus ENSFCAG00000005412 I 0.000
RBM8A Homo sapiens ENSG00000131795 D 0.000
RBM8A Gasterosteus aculeatus ENSGACG00000013157 I 0.000
RBM8A Gorilla gorilla ENSGGOG00000005422 I 0.000
ENSLAFG00000021886 Loxodonta africana ENSLAFG00000021886 I 0.000
RBM8A Macropus eugenii ENSMEUG00000016058 I 0.000
RBM8A Macaca mulatta ENSMMUG00000016051 I 0.000
RBM8A Monodelphis domestica ENSMODG00000018752 I 0.000
Rbm8a Mus musculus ENSMUSG00000038374 I 0.000
B020018G12Rik Mus musculus ENSMUSG00000078184 I 0.000
RBM8A Otolemur garnettii ENSOGAG00000000202 I 0.000
Q8JJC6_ORYLA Oryzias latipes ENSORLG00000016263 I 0.000
ENSPCAG00000002146 Procavia capensis ENSPCAG00000002146 I 0.000
ENSPPYG00000000929 Pongo pygmaeus ENSPPYG00000000929 I 0.000
RBM8A Pan troglodytes ENSPTRG00000001201 I 0.000
RBM8A Pteropus vampyrus ENSPVAG00000014471 I 0.000
Rbm8a Rattus norvegicus ENSRNOG00000021215 I 0.000
RBM8A Sorex araneus ENSSARG00000013289 I 0.000
RBM8A Sus scrofa ENSSSCG00000006684 I 0.000
RBM8A Spermophilus tridecemlineatus ENSSTOG00000013917 I 0.000
B5FZD1_TAEGU Taeniopygia guttata ENSTGUG00000004447 I 0.000
RBM8A Tetraodon nigroviridis ENSTNIG00000006869 I 0.000
RBM8A Takifugu rubripes ENSTRUG00000013173 I 0.000
RBM8A Tursiops truncatus ENSTTRG00000009081 I 0.000
estExt_fgenesh1_pg.C_1530030 Capitella teleta estExt_fgenesh1_pg.C_1530030 I 0.000
estExt_fgenesh2_kg.C_130331 Serpula lacrymans estExt_fgenesh2_kg.C_130331 I 0.000
estExt_fgenesh2_kg.C_60460 Agaricus bisporus estExt_fgenesh2_kg.C_60460 I 0.000
estExt_fgenesh2_pg.C_4600002 Branchiostoma floridae estExt_fgenesh2_pg.C_4600002 I 0.000
estExt_Genewise1.C_210127 Daphnia pulex estExt_Genewise1.C_210127 I 0.000
e_gw.589.3.1 Branchiostoma floridae e_gw.589.3.1 I 0.000
e_gw1.53.304.1 Lottia gigantea e_gw1.53.304.1 I 0.000
GI19803 Drosophila mojavensis FBgn0142540 I 0.000
fgenesh1_kg.C_scaffold_4000104 Schizophyllum commune fgenesh1_kg.C_scaffold_4000104 I 0.000
fgenesh1_pm.C_scaffold_6000172 Pleurotus ostreatus fgenesh1_pm.C_scaffold_6000172 I 0.000
gww1.22.130.1 Laccaria bicolor gww1.22.130.1 I 0.000
nasonia_NCBI_hmm460663 Nasonia vitripennis nasonia_NCBI_hmm460663 I 0.000
Q6PH90 Xenopus laevis Q6PH90 I 0.000
Q9DF42 Xenopus laevis Q9DF42 I 0.000
Sjc_0039250 Schistosoma japonicum Sjc_0039250 I 0.000
Smp_002550 Schistosoma mansoni Smp_002550 I 0.000
SPPG_02323 Spizellomyces punctatus SPPG_02323 I 0.000
XP_001194199.1 Strongylocentrotus purpuratus XP_001194199.1 I 0.000
XP_792124.1 Strongylocentrotus purpuratus XP_792124.1 I 0.000