CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CpipJ_CPIJ016329
(
Culex pipiens
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CpipJ_CPIJ016329
T29008_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
bru-3
M117_0.6
Drosophila melanogaster
KUGKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00122
0.714
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CpipJ_CPIJ016329-RA
RRM
6
74
LFVGMLSKKYNENDVRQLFSGHGSIEECTVLRDPSGQSKGCAFVTFATKQAAIGAIKALHQSKTMEGCS
CpipJ_CPIJ016329-RA
RRM
276
346
LFIYHLPQEFTDTDLASTFLPFGNVVSAKVFIDKQTNLSKCFGFVSFDNGASAQAAIQAMHGFQIGTKRLK
Links
Other
RRM
family RBPs
Other
Culex pipiens
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAG27092
Xenopus laevis
AAG27092
I
0.000
AAH56659
Xenopus laevis
AAH56659
I
0.000
AAH73361
Xenopus laevis
AAH73361
I
0.000
AGAP006365
Anopheles gambiae
AGAP006365
I
0.000
amel4_ncbi_hmm2170
Apis mellifera
amel4_ncbi_hmm2170
I
0.000
Ame_R013073
Ailuropoda melanoleuca
Ame_R013073
I
0.000
CBG18074
Caenorhabditis briggsae
CBG18074
I
0.000
CJA17011
Caenorhabditis japonica
CJA17011
I
0.000
CPIJ007339
Culex quinquefasciatus
CPIJ007339
I
0.000
CpipJ_CPIJ007339
Culex pipiens
CpipJ_CPIJ007339
I
0.000
CRE20368
Caenorhabditis remanei
CRE20368
I
0.000
DGIL_AUG5s13034g4t1
Acyrtosiphon pisum
DGIL_AUG5s13034g4t1
I
0.000
DGIL_AUG5s25g7t1
Acyrtosiphon pisum
DGIL_AUG5s25g7t1
I
0.000
RBM8A_BOVIN
Bos taurus
ENSBTAG00000008369
I
0.000
RBM8A
Canis familiaris
ENSCAFG00000023172
I
0.000
ENSCING00000004877
Ciona intestinalis
ENSCING00000004877
I
0.000
LOC100399389
Callithrix jacchus
ENSCJAG00000002209
I
0.000
RBM8A
Cavia porcellus
ENSCPOG00000022453
I
0.000
ENSCSAVG00000005685
Ciona savignyi
ENSCSAVG00000005685
I
0.000
rbm8a
Danio rerio
ENSDARG00000016516
I
0.000
Q6DTK7_HORSE
Equus caballus
ENSECAG00000022024
I
0.000
ENSETEG00000017932
Echinops telfairi
ENSETEG00000017932
I
0.000
RBM8A
Felis catus
ENSFCAG00000005412
I
0.000
RBM8A
Homo sapiens
ENSG00000131795
D
0.000
RBM8A
Gasterosteus aculeatus
ENSGACG00000013157
I
0.000
RBM8A
Gorilla gorilla
ENSGGOG00000005422
I
0.000
ENSLAFG00000021886
Loxodonta africana
ENSLAFG00000021886
I
0.000
RBM8A
Macropus eugenii
ENSMEUG00000016058
I
0.000
RBM8A
Macaca mulatta
ENSMMUG00000016051
I
0.000
RBM8A
Monodelphis domestica
ENSMODG00000018752
I
0.000
Rbm8a
Mus musculus
ENSMUSG00000038374
I
0.000
B020018G12Rik
Mus musculus
ENSMUSG00000078184
I
0.000
RBM8A
Otolemur garnettii
ENSOGAG00000000202
I
0.000
Q8JJC6_ORYLA
Oryzias latipes
ENSORLG00000016263
I
0.000
ENSPCAG00000002146
Procavia capensis
ENSPCAG00000002146
I
0.000
ENSPPYG00000000929
Pongo pygmaeus
ENSPPYG00000000929
I
0.000
RBM8A
Pan troglodytes
ENSPTRG00000001201
I
0.000
RBM8A
Pteropus vampyrus
ENSPVAG00000014471
I
0.000
Rbm8a
Rattus norvegicus
ENSRNOG00000021215
I
0.000
RBM8A
Sorex araneus
ENSSARG00000013289
I
0.000
RBM8A
Sus scrofa
ENSSSCG00000006684
I
0.000
RBM8A
Spermophilus tridecemlineatus
ENSSTOG00000013917
I
0.000
B5FZD1_TAEGU
Taeniopygia guttata
ENSTGUG00000004447
I
0.000
RBM8A
Tetraodon nigroviridis
ENSTNIG00000006869
I
0.000
RBM8A
Takifugu rubripes
ENSTRUG00000013173
I
0.000
RBM8A
Tursiops truncatus
ENSTTRG00000009081
I
0.000
estExt_fgenesh1_pg.C_1530030
Capitella teleta
estExt_fgenesh1_pg.C_1530030
I
0.000
estExt_fgenesh2_kg.C_130331
Serpula lacrymans
estExt_fgenesh2_kg.C_130331
I
0.000
estExt_fgenesh2_kg.C_60460
Agaricus bisporus
estExt_fgenesh2_kg.C_60460
I
0.000
estExt_fgenesh2_pg.C_4600002
Branchiostoma floridae
estExt_fgenesh2_pg.C_4600002
I
0.000
estExt_Genewise1.C_210127
Daphnia pulex
estExt_Genewise1.C_210127
I
0.000
e_gw.589.3.1
Branchiostoma floridae
e_gw.589.3.1
I
0.000
e_gw1.53.304.1
Lottia gigantea
e_gw1.53.304.1
I
0.000
GI19803
Drosophila mojavensis
FBgn0142540
I
0.000
fgenesh1_kg.C_scaffold_4000104
Schizophyllum commune
fgenesh1_kg.C_scaffold_4000104
I
0.000
fgenesh1_pm.C_scaffold_6000172
Pleurotus ostreatus
fgenesh1_pm.C_scaffold_6000172
I
0.000
gww1.22.130.1
Laccaria bicolor
gww1.22.130.1
I
0.000
nasonia_NCBI_hmm460663
Nasonia vitripennis
nasonia_NCBI_hmm460663
I
0.000
Q6PH90
Xenopus laevis
Q6PH90
I
0.000
Q9DF42
Xenopus laevis
Q9DF42
I
0.000
Sjc_0039250
Schistosoma japonicum
Sjc_0039250
I
0.000
Smp_002550
Schistosoma mansoni
Smp_002550
I
0.000
SPPG_02323
Spizellomyces punctatus
SPPG_02323
I
0.000
XP_001194199.1
Strongylocentrotus purpuratus
XP_001194199.1
I
0.000
XP_792124.1
Strongylocentrotus purpuratus
XP_792124.1
I
0.000