CpipJ_CPIJ016329 (Culex pipiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CpipJ_CPIJ016329 T29008_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ016329-RA RRM 6 74
CpipJ_CPIJ016329-RA RRM 276 346

Links

Other RRM family RBPs
Other Culex pipiens RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL000695 Aedes aegypti AAEL000695 I 0.964
AAEL014033 Aedes aegypti AAEL014033 I 0.707
AGAP004950 Anopheles gambiae AGAP004950 I 0.707
AGAP009477 Anopheles gambiae AGAP009477 N 0.923
BGIBMGA010431 Bombyx mori BGIBMGA010431 I 0.879
CPIJ016329 Culex quinquefasciatus CPIJ016329 I 1.000
Q2KI16_BOVIN Bos taurus ENSBTAG00000008937 I 0.743
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.743
CELF2 Gorilla gorilla ENSGGOG00000009330 I 0.743
Celf6 Mus musculus ENSMUSG00000032297 I 0.700
CELF2 Ornithorhynchus anatinus ENSOANG00000015432 I 0.743
CELF6 Ochotona princeps ENSOPRG00000019169 I 0.700
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 0.700
CELF5 Takifugu rubripes ENSTRUG00000017937 I 0.700
estExt_fgenesh2_pm.C_730008 Branchiostoma floridae estExt_fgenesh2_pm.C_730008 I 0.779
aret Drosophila melanogaster FBgn0000114 D 0.787
GF10965 Drosophila ananassae FBgn0088005 I 0.714
GG13757 Drosophila erecta FBgn0106020 I 0.714
GH14684 Drosophila grimshawi FBgn0122160 I 0.707
GI13095 Drosophila mojavensis FBgn0135852 I 0.707
GL18622 Drosophila persimilis FBgn0156223 N 0.816
GL21647 Drosophila persimilis FBgn0159240 I 0.714
GM24582 Drosophila sechellia FBgn0179445 I 0.714
GD12651 Drosophila simulans FBgn0184378 I 0.714
GJ13842 Drosophila virilis FBgn0201061 I 0.707
GK17101 Drosophila willistoni FBgn0219100 I 0.714
GE18585 Drosophila yakuba FBgn0235992 N 0.857
GE20053 Drosophila yakuba FBgn0237378 I 0.714
GA25731-RA Drosophila pseudoobscura FBgn0247108 N 0.857
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.729
bru-3 Drosophila melanogaster FBgn0262350 D 0.714
FBgn0262475 Drosophila melanogaster FBgn0262475 I 0.886
LOAG_05508 Loa loa LOAG_05508 I 0.707
PHUM315130 Pediculus humanus PHUM315130 I 0.721
PHUM533900 Pediculus humanus PHUM533900 N 0.736