CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TIA1
(
Equus caballus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSECAG00000022361
T36703_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
TIA1
M156_0.6
Homo sapiens
WUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00165
0.766
TIA1
M075_0.6
Homo sapiens
UUUUUBK
RNAcompete
Ray et al.(2013)
RNCMPT00077
0.766
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSECAP00000020060
RRM
9
77
LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAAAALAAMNGRKIMGKEVK
ENSECAP00000020060
RRM
108
161
VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWVSS
ENSECAP00000020060
RRM
236
281
TPLGQPLFLSIFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK
Links
Other
RRM
family RBPs
Other
Equus caballus
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
114532
Helobdella robusta
114532
N
0.000
AAEL005046
Aedes aegypti
AAEL005046
N
0.000
AAH73374
Xenopus laevis
AAH73374
N
0.000
AAH75146
Xenopus laevis
AAH75146
N
0.000
AAH77813
Xenopus laevis
AAH77813
N
0.000
AGAP008433
Anopheles gambiae
AGAP008433
N
0.000
amel4_ncbi_hmm11379
Apis mellifera
amel4_ncbi_hmm11379
N
0.000
Ame_R004270
Ailuropoda melanoleuca
Ame_R004270
N
0.000
Ame_R014613
Ailuropoda melanoleuca
Ame_R014613
N
0.000
BGIBMGA006208
Bombyx mori
BGIBMGA006208
N
0.000
CPIJ014704
Culex quinquefasciatus
CPIJ014704
N
0.000
CPIJ019416
Culex quinquefasciatus
CPIJ019416
N
0.000
CpipJ_CPIJ014704
Culex pipiens
CpipJ_CPIJ014704
N
0.000
CpipJ_CPIJ019416
Culex pipiens
CpipJ_CPIJ019416
N
0.000
DGIL_AUG5s7518g10t1
Acyrtosiphon pisum
DGIL_AUG5s7518g10t1
N
0.000
RBM23
Anolis carolinensis
ENSACAG00000001569
N
0.000
RBM39
Anolis carolinensis
ENSACAG00000006436
N
0.000
Q2HJD8_BOVIN
Bos taurus
ENSBTAG00000003949
N
0.000
Q0IIK8_BOVIN
Bos taurus
ENSBTAG00000038333
N
0.000
RBM39
Canis familiaris
ENSCAFG00000008327
N
0.000
RBM23
Canis familiaris
ENSCAFG00000011217
N
0.000
RBM23
Choloepus hoffmanni
ENSCHOG00000004460
N
0.000
RBM23
Callithrix jacchus
ENSCJAG00000008482
N
0.000
B0KWM7_CALJA
Callithrix jacchus
ENSCJAG00000017535
N
0.000
RBM39
Cavia porcellus
ENSCPOG00000014625
N
0.000
ENSCPOG00000021775
Cavia porcellus
ENSCPOG00000021775
N
0.000
rbm39a
Danio rerio
ENSDARG00000011613
N
0.000
rbm39b
Danio rerio
ENSDARG00000041853
N
0.000
RBM23
Dasypus novemcinctus
ENSDNOG00000002569
N
0.000
ENSDORG00000004926
Dipodomys ordii
ENSDORG00000004926
N
0.000
LOC100052786
Equus caballus
ENSECAG00000009910
N
0.000
RBM39
Equus caballus
ENSECAG00000013423
N
0.000
RBM39
Erinaceus europaeus
ENSEEUG00000004390
N
0.000
RBM23
Erinaceus europaeus
ENSEEUG00000015560
N
0.000
RBM39
Echinops telfairi
ENSETEG00000016295
N
0.000
RBM23
Felis catus
ENSFCAG00000006632
N
0.000
RBM23
Homo sapiens
ENSG00000100461
N
0.000
RBM39
Homo sapiens
ENSG00000131051
N
0.000
RBM23
Gasterosteus aculeatus
ENSGACG00000002797
N
0.000
RBM23
Gasterosteus aculeatus
ENSGACG00000003376
N
0.000
RBM39
Gallus gallus
ENSGALG00000001550
N
0.000
RBM39
Gorilla gorilla
ENSGGOG00000003950
N
0.000
RBM23
Gorilla gorilla
ENSGGOG00000015707
N
0.000
RBM39
Loxodonta africana
ENSLAFG00000010346
N
0.000
RBM23
Loxodonta africana
ENSLAFG00000018567
N
0.000
RBM39
Meleagris gallopavo
ENSMGAG00000001509
N
0.000
RBM39
Microcebus murinus
ENSMICG00000001668
N
0.000
RBM23
Microcebus murinus
ENSMICG00000006364
N
0.000
RBM23
Myotis lucifugus
ENSMLUG00000012923
N
0.000
LOC710066
Macaca mulatta
ENSMMUG00000018381
N
0.000
RBM39
Monodelphis domestica
ENSMODG00000001557
N
0.000
RBM23
Monodelphis domestica
ENSMODG00000024448
N
0.000
Rbm39
Mus musculus
ENSMUSG00000027620
N
0.000
RBM23
Oryctolagus cuniculus
ENSOCUG00000002006
N
0.000
B7NZJ5_RABIT
Oryctolagus cuniculus
ENSOCUG00000007050
N
0.000
RBM39
Otolemur garnettii
ENSOGAG00000011227
N
0.000
RBM23
Ochotona princeps
ENSOPRG00000001092
N
0.000
RBM39
Ochotona princeps
ENSOPRG00000002183
N
0.000
RBM23
Oryzias latipes
ENSORLG00000009919
N
0.000
RBM39
Procavia capensis
ENSPCAG00000008764
N
0.000
ENSPPYG00000005649
Pongo pygmaeus
ENSPPYG00000005649
N
0.000
ENSPPYG00000010963
Pongo pygmaeus
ENSPPYG00000010963
N
0.000
RBM23
Pan troglodytes
ENSPTRG00000006151
N
0.000
RBM39
Pan troglodytes
ENSPTRG00000013449
N
0.000
RBM23
Pteropus vampyrus
ENSPVAG00000013785
N
0.000
RBM39
Pteropus vampyrus
ENSPVAG00000014944
N
0.000
Rbm39
Rattus norvegicus
ENSRNOG00000019848
N
0.000
RBM23
Sorex araneus
ENSSARG00000005165
N
0.000
RBM39
Sorex araneus
ENSSARG00000007673
N
0.000
RBM39
Sus scrofa
ENSSSCG00000007309
N
0.000
RBM23
Spermophilus tridecemlineatus
ENSSTOG00000010354
N
0.000
RBM39
Tupaia belangeri
ENSTBEG00000017320
N
0.000
RBM39
Taeniopygia guttata
ENSTGUG00000003048
N
0.000
RBM23
Tetraodon nigroviridis
ENSTNIG00000005223
N
0.000
RBM23
Tetraodon nigroviridis
ENSTNIG00000017904
N
0.000
RBM23
Takifugu rubripes
ENSTRUG00000011352
N
0.000
RBM39
Tarsius syrichta
ENSTSYG00000005605
N
0.000
RBM23
Tarsius syrichta
ENSTSYG00000014755
N
0.000
RBM23
Tursiops truncatus
ENSTTRG00000001500
N
0.000
RBM39
Tursiops truncatus
ENSTTRG00000017039
N
0.000
RBM23
Vicugna pacos
ENSVPAG00000000599
N
0.000
RBM39
Vicugna pacos
ENSVPAG00000003819
N
0.000
rbm39
Xenopus tropicalis
ENSXETG00000007434
N
0.000
rbm23
Xenopus tropicalis
ENSXETG00000022623
N
0.000
estExt_Genewise1.C_sca_90322
Lottia gigantea
estExt_Genewise1.C_sca_90322
N
0.000
estExt_Genewise1Plus.C_150014
Daphnia pulex
estExt_Genewise1Plus.C_150014
N
0.000
e_gw.57.85.1
Branchiostoma floridae
e_gw.57.85.1
N
0.000
CG11266
Drosophila melanogaster
FBgn0031883
N
0.000
GA10876-RA
Drosophila pseudoobscura
FBgn0070932
N
0.000
GF14957
Drosophila ananassae
FBgn0091982
N
0.000
GG10454
Drosophila erecta
FBgn0102763
N
0.000
GH13506
Drosophila grimshawi
FBgn0120982
N
0.000
GI10246
Drosophila mojavensis
FBgn0133011
N
0.000
GM16278
Drosophila sechellia
FBgn0171194
N
0.000
GD23448
Drosophila simulans
FBgn0194830
N
0.000
GJ18017
Drosophila virilis
FBgn0205182
N
0.000
GK15272
Drosophila willistoni
FBgn0217277
N
0.000
GE14328
Drosophila yakuba
FBgn0231943
N
0.000
PHUM394230
Pediculus humanus
PHUM394230
N
0.000