CAC95018 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CAC95018 T59689_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
TIA1
M156_0.6 		Homo sapiens WUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00165 		0.927
TIA1
M075_0.6 		Homo sapiens UUUUUBK RNAcompete
Ray et al.(2013)
RNCMPT00077 		0.927
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CAC95018 RRM 9 77
CAC95018 RRM 108 178
CAC95018 RRM 216 280

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

69 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH77169 Xenopus laevis AAH77169 I 1.000
AAH80105 Xenopus laevis AAH80105 I 0.985
tia1 Xenopus tropicalis ENSXETG00000008514 I 0.980
Tia1 Mus musculus ENSMUSG00000071337 I 0.932
TIA1 Loxodonta africana ENSLAFG00000003463 I 0.927
TIA1 Pan troglodytes ENSPTRG00000023495 I 0.927
Tia1 Rattus norvegicus ENSRNOG00000016813 I 0.927
TIA1 Otolemur garnettii ENSOGAG00000010572 I 0.927
TIA1 Macaca mulatta ENSMMUG00000001126 I 0.927
TIA1 Monodelphis domestica ENSMODG00000011515 I 0.927
ENSACAG00000009648 Anolis carolinensis ENSACAG00000009648 I 0.927
Q0VBZ6_BOVIN Bos taurus ENSBTAG00000019182 I 0.927
TIA1 Oryctolagus cuniculus ENSOCUG00000011204 I 0.927
TIA1 Homo sapiens ENSG00000116001 D 0.927
TIA1 Callithrix jacchus ENSCJAG00000019278 I 0.927
TIA1 Cavia porcellus ENSCPOG00000008327 I 0.927
Ame_R002705 Ailuropoda melanoleuca Ame_R002705 I 0.922
Q800W4_CHICK Gallus gallus ENSGALG00000013879 I 0.922
TIA1 Pteropus vampyrus ENSPVAG00000004846 I 0.922
TIA1 Echinops telfairi ENSETEG00000010021 I 0.922
TIA1 Canis familiaris ENSCAFG00000003341 I 0.922
TIA1 Tursiops truncatus ENSTTRG00000001195 I 0.922
TIA1 Dasypus novemcinctus ENSDNOG00000016356 I 0.922
TIA1 Meleagris gallopavo ENSMGAG00000003493 I 0.917
tia1 Danio rerio ENSDARG00000052536 I 0.912
ENSPPYG00000012326 Pongo pygmaeus ENSPPYG00000012326 I 0.912
TIA1 Oryzias latipes ENSORLG00000015642 I 0.907
TIA1 Takifugu rubripes ENSTRUG00000015136 I 0.907
TIA1 Tetraodon nigroviridis ENSTNIG00000011433 I 0.907
TIA1 Taeniopygia guttata ENSTGUG00000017307 I 0.893
TIA1 Takifugu rubripes ENSTRUG00000005456 I 0.873
TIA1 Oryzias latipes ENSORLG00000002529 I 0.873
TIA1 Tetraodon nigroviridis ENSTNIG00000013470 I 0.873
Tia1 Dipodomys ordii ENSDORG00000008601 I 0.873
tial1 Danio rerio ENSDARG00000009525 I 0.873
TIA1 Gasterosteus aculeatus ENSGACG00000015800 I 0.873
ENSSSCG00000010685 Sus scrofa ENSSSCG00000010685 I 0.863
Tial1 Mus musculus ENSMUSG00000030846 I 0.863
TIAL1 Equus caballus ENSECAG00000009970 I 0.863
A1A4R7_BOVIN Bos taurus ENSBTAG00000004080 I 0.863
TIAL1 Macaca mulatta ENSMMUG00000001472 I 0.863
TIAL1 Homo sapiens ENSG00000151923 D 0.863
tia1l Danio rerio ENSDARG00000026476 I 0.859
TIAL1 Oryctolagus cuniculus ENSOCUG00000003783 I 0.859
TIAL1 Anolis carolinensis ENSACAG00000016986 I 0.854
TIAL1 Gasterosteus aculeatus ENSGACG00000003365 I 0.845
TIA1 Gasterosteus aculeatus ENSGACG00000013294 I 0.839
ENSTBEG00000017228 Tupaia belangeri ENSTBEG00000017228 I 0.829
TIAL1 Oryzias latipes ENSORLG00000013798 I 0.829
TIAL1 Canis familiaris ENSCAFG00000012171 I 0.797
TIAL1 Tarsius syrichta ENSTSYG00000004348 I 0.797
ENSPPYG00000002703 Pongo pygmaeus ENSPPYG00000002703 I 0.797
TIAL1 Callithrix jacchus ENSCJAG00000019682 I 0.797
TIAL1 Monodelphis domestica ENSMODG00000008865 I 0.797
TIAL1 Pan troglodytes ENSPTRG00000002996 I 0.797
Tial1 Rattus norvegicus ENSRNOG00000020271 I 0.797
Q800W1_CHICK Gallus gallus ENSGALG00000009427 I 0.797
TIAL1 Pteropus vampyrus ENSPVAG00000017585 I 0.793
TIAL1 Procavia capensis ENSPCAG00000003192 I 0.793
TIA1 Sorex araneus ENSSARG00000001997 I 0.785
TIAL1 Vicugna pacos ENSVPAG00000001240 I 0.771
Tial1 Dipodomys ordii ENSDORG00000010683 I 0.761
estExt_fgenesh2_pg.C_1430023 Branchiostoma floridae estExt_fgenesh2_pg.C_1430023 I 0.751
gw.406.24.1 Branchiostoma floridae gw.406.24.1 I 0.746
TIAL1 Takifugu rubripes ENSTRUG00000017931 I 0.745
TIA1 Vicugna pacos ENSVPAG00000007449 I 0.741
TIAL1 Ornithorhynchus anatinus ENSOANG00000004896 I 0.737
TIA1 Equus caballus ENSECAG00000022361 I 0.712
TIAL1 Dasypus novemcinctus ENSDNOG00000009552 I 0.710