tia1 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000008514 T42852_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
TIA1
M156_0.6 		Homo sapiens WUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00165 		0.946
TIA1
M075_0.6 		Homo sapiens UUUUUBK RNAcompete
Ray et al.(2013)
RNCMPT00077 		0.946
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000018640 RRM 9 77
ENSXETP00000018640 RRM 108 178
ENSXETP00000018640 RRM 216 280

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH80105 Xenopus laevis AAH80105 I 0.995
AAH77169 Xenopus laevis AAH77169 I 0.980
CAC95018 Xenopus laevis CAC95018 I 0.980
Tia1 Mus musculus ENSMUSG00000071337 I 0.951
TIA1 Otolemur garnettii ENSOGAG00000010572 I 0.946
TIA1 Loxodonta africana ENSLAFG00000003463 I 0.946
TIA1 Cavia porcellus ENSCPOG00000008327 I 0.946
TIA1 Monodelphis domestica ENSMODG00000011515 I 0.946
TIA1 Pan troglodytes ENSPTRG00000023495 I 0.946
TIA1 Homo sapiens ENSG00000116001 D 0.946
Tia1 Rattus norvegicus ENSRNOG00000016813 I 0.946
TIA1 Callithrix jacchus ENSCJAG00000019278 I 0.946
TIA1 Oryctolagus cuniculus ENSOCUG00000011204 I 0.946
TIA1 Macaca mulatta ENSMMUG00000001126 I 0.946
ENSACAG00000009648 Anolis carolinensis ENSACAG00000009648 I 0.946
Q0VBZ6_BOVIN Bos taurus ENSBTAG00000019182 I 0.946
TIA1 Pteropus vampyrus ENSPVAG00000004846 I 0.941
TIA1 Tursiops truncatus ENSTTRG00000001195 I 0.941
TIA1 Echinops telfairi ENSETEG00000010021 I 0.941
Ame_R002705 Ailuropoda melanoleuca Ame_R002705 I 0.941
TIA1 Dasypus novemcinctus ENSDNOG00000016356 I 0.941
TIA1 Canis familiaris ENSCAFG00000003341 I 0.941
Q800W4_CHICK Gallus gallus ENSGALG00000013879 I 0.941
TIA1 Meleagris gallopavo ENSMGAG00000003493 I 0.937
ENSPPYG00000012326 Pongo pygmaeus ENSPPYG00000012326 I 0.932
tia1 Danio rerio ENSDARG00000052536 I 0.932
TIA1 Takifugu rubripes ENSTRUG00000015136 I 0.927
TIA1 Oryzias latipes ENSORLG00000015642 I 0.927
TIA1 Tetraodon nigroviridis ENSTNIG00000011433 I 0.927
TIA1 Taeniopygia guttata ENSTGUG00000017307 I 0.907
Tia1 Dipodomys ordii ENSDORG00000008601 I 0.888
TIA1 Oryzias latipes ENSORLG00000002529 I 0.883
TIA1 Takifugu rubripes ENSTRUG00000005456 I 0.883
TIA1 Gasterosteus aculeatus ENSGACG00000015800 I 0.883
tial1 Danio rerio ENSDARG00000009525 I 0.883
TIA1 Tetraodon nigroviridis ENSTNIG00000013470 I 0.883
ENSSSCG00000010685 Sus scrofa ENSSSCG00000010685 I 0.873
Tial1 Mus musculus ENSMUSG00000030846 I 0.873
TIAL1 Macaca mulatta ENSMMUG00000001472 I 0.873
A1A4R7_BOVIN Bos taurus ENSBTAG00000004080 I 0.873
TIAL1 Homo sapiens ENSG00000151923 D 0.873
TIAL1 Equus caballus ENSECAG00000009970 I 0.873
TIAL1 Oryctolagus cuniculus ENSOCUG00000003783 I 0.868
TIAL1 Anolis carolinensis ENSACAG00000016986 I 0.863
TIA1 Gasterosteus aculeatus ENSGACG00000013294 I 0.859
tia1l Danio rerio ENSDARG00000026476 I 0.849
TIAL1 Gasterosteus aculeatus ENSGACG00000003365 I 0.845
ENSTBEG00000017228 Tupaia belangeri ENSTBEG00000017228 I 0.844
TIAL1 Oryzias latipes ENSORLG00000013798 I 0.820
TIAL1 Monodelphis domestica ENSMODG00000008865 I 0.806
TIAL1 Canis familiaris ENSCAFG00000012171 I 0.806
Tial1 Rattus norvegicus ENSRNOG00000020271 I 0.806
TIAL1 Pan troglodytes ENSPTRG00000002996 I 0.806
TIAL1 Tarsius syrichta ENSTSYG00000004348 I 0.806
Q800W1_CHICK Gallus gallus ENSGALG00000009427 I 0.806
ENSPPYG00000002703 Pongo pygmaeus ENSPPYG00000002703 I 0.806
TIAL1 Callithrix jacchus ENSCJAG00000019682 I 0.806
TIA1 Sorex araneus ENSSARG00000001997 I 0.805
TIAL1 Pteropus vampyrus ENSPVAG00000017585 I 0.802
TIAL1 Procavia capensis ENSPCAG00000003192 I 0.802
TIAL1 Vicugna pacos ENSVPAG00000001240 I 0.780
estExt_fgenesh2_pg.C_1430023 Branchiostoma floridae estExt_fgenesh2_pg.C_1430023 I 0.766
Tial1 Dipodomys ordii ENSDORG00000010683 I 0.766
gw.406.24.1 Branchiostoma floridae gw.406.24.1 I 0.761
TIA1 Vicugna pacos ENSVPAG00000007449 I 0.756
TIAL1 Takifugu rubripes ENSTRUG00000017931 I 0.755
TIAL1 Ornithorhynchus anatinus ENSOANG00000004896 I 0.746
TIA1 Equus caballus ENSECAG00000022361 I 0.727
TIAL1 Dasypus novemcinctus ENSDNOG00000009552 I 0.720
TIA1 Procavia capensis ENSPCAG00000001859 I 0.712
TIA1 Ochotona princeps ENSOPRG00000001066 I 0.702