CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM34
(
Homo sapiens
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSG00000188739
T37342_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000355565
RRM
182
229
VFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIK
ENSP00000355565
RRM
223
269
KKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIR
ENSP00000355565
RRM
284
353
VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLR
ENSP00000386226
RRM
187
234
VFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIK
ENSP00000386226
RRM
228
274
KKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIR
ENSP00000386226
RRM
289
358
VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLR
ENSP00000387878
RRM
187
200
VFVGNLPVTCNKKI
ENSP00000387878
RRM
208
254
KKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIR
ENSP00000387878
RRM
269
338
VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLR
ENSP00000400000
RRM
185
198
VFVGNLPVTCNKKI
ENSP00000400000
RRM
206
252
KKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIR
ENSP00000400000
RRM
267
336
VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLR
Links
Other
RRM
family RBPs
Other
Homo sapiens
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R015227
Ailuropoda melanoleuca
Ame_R015227
N
0.933
RBM34
Anolis carolinensis
ENSACAG00000001253
N
0.709
A8NJ74_BOVIN
Bos taurus
ENSBTAG00000000221
N
0.892
A6MKB3_CALJA
Callithrix jacchus
ENSCJAG00000018125
N
0.964
RBM34
Cavia porcellus
ENSCPOG00000015213
N
0.891
Rbm34
Dipodomys ordii
ENSDORG00000006420
N
0.898
LOC100146167
Equus caballus
ENSECAG00000013333
N
0.885
RBM34
Felis catus
ENSFCAG00000001852
N
0.921
RBM34
Gorilla gorilla
ENSGGOG00000007924
N
0.988
RBM34
Loxodonta africana
ENSLAFG00000014289
N
0.927
RBM34
Myotis lucifugus
ENSMLUG00000016224
N
0.867
ARID4B
Macaca mulatta
ENSMMUG00000007141
N
0.970
RBM34
Monodelphis domestica
ENSMODG00000008436
N
0.787
Rbm34
Mus musculus
ENSMUSG00000033931
N
0.867
RBM34
Ornithorhynchus anatinus
ENSOANG00000001206
N
0.812
RBM34
Oryctolagus cuniculus
ENSOCUG00000009173
N
0.904
RBM34
Ochotona princeps
ENSOPRG00000013930
N
0.824
RBM34
Pan troglodytes
ENSPTRG00000032432
N
0.994
RBM34
Pteropus vampyrus
ENSPVAG00000015158
N
0.874
Rbm34
Rattus norvegicus
ENSRNOG00000020004
N
0.867
D3ZPK9_RAT
Rattus norvegicus
ENSRNOG00000023341
N
0.774
RBM34
Sus scrofa
ENSSSCG00000010157
N
0.927
RBM34
Tursiops truncatus
ENSTTRG00000002216
N
0.770