CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PPIL4
(
Loxodonta africana
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSLAFG00000026804
T38115_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLAFP00000028831
RRM
243
313
LFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIH
Links
Other
RRM
family RBPs
Other
Loxodonta africana
RBPs
186 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AGAP005006
Anopheles gambiae
AGAP005006
N
0.000
amel4_ncbi_hmm17771
Apis mellifera
amel4_ncbi_hmm17771
N
0.000
amel4_ncbi_hmm17771
Tribolium castaneum
amel4_ncbi_hmm17771
N
0.000
Ame_R004744
Ailuropoda melanoleuca
Ame_R004744
N
0.000
BGIBMGA003602
Bombyx mori
BGIBMGA003602
N
0.000
CPIJ014539
Culex quinquefasciatus
CPIJ014539
N
0.000
CpipJ_CPIJ014539
Culex pipiens
CpipJ_CPIJ014539
N
0.000
DGIL_AUG5s11505g3t1
Acyrtosiphon pisum
DGIL_AUG5s11505g3t1
N
0.000
DGIL_AUG5s8618g4t1
Acyrtosiphon pisum
DGIL_AUG5s8618g4t1
N
0.000
U2SURP
Anolis carolinensis
ENSACAG00000009512
N
0.000
Q148C6_BOVIN
Bos taurus
ENSBTAG00000009154
N
0.000
U2SURP
Canis familiaris
ENSCAFG00000007973
N
0.000
U2SURP
Choloepus hoffmanni
ENSCHOG00000001300
N
0.000
LOC100411013
Callithrix jacchus
ENSCJAG00000001639
N
0.000
U2SURP
Cavia porcellus
ENSCPOG00000011656
N
0.000
U2SURP
Danio rerio
ENSDARG00000061490
N
0.000
zgc:163098
Danio rerio
ENSDARG00000078911
N
0.000
U2SURP
Dasypus novemcinctus
ENSDNOG00000006427
N
0.000
LOC100051188
Equus caballus
ENSECAG00000022460
N
0.000
U2SURP
Erinaceus europaeus
ENSEEUG00000013553
N
0.000
U2SURP
Echinops telfairi
ENSETEG00000000149
N
0.000
U2SURP
Homo sapiens
ENSG00000163714
N
0.000
U2SURP
Gasterosteus aculeatus
ENSGACG00000003763
N
0.000
LOC424773
Gallus gallus
ENSGALG00000002612
N
0.000
U2SURP
Gorilla gorilla
ENSGGOG00000005563
N
0.000
U2SURP
Loxodonta africana
ENSLAFG00000002566
N
0.000
U2SURP
Macropus eugenii
ENSMEUG00000000127
N
0.000
U2SURP
Meleagris gallopavo
ENSMGAG00000006549
N
0.000
U2SURP
Myotis lucifugus
ENSMLUG00000002920
N
0.000
U2SURP
Macaca mulatta
ENSMMUG00000002775
N
0.000
XM_001372164.1
Monodelphis domestica
ENSMODG00000021242
N
0.000
2610101N10Rik
Mus musculus
ENSMUSG00000032407
N
0.000
U2SURP
Ornithorhynchus anatinus
ENSOANG00000003644
N
0.000
U2SURP
Oryctolagus cuniculus
ENSOCUG00000012121
N
0.000
U2SURP
Oryzias latipes
ENSORLG00000010235
N
0.000
U2SURP
Procavia capensis
ENSPCAG00000015251
N
0.000
ENSPPYG00000014178
Pongo pygmaeus
ENSPPYG00000014178
N
0.000
U2SURP
Pan troglodytes
ENSPTRG00000015489
N
0.000
U2SURP
Pteropus vampyrus
ENSPVAG00000016077
N
0.000
RGD1307882
Rattus norvegicus
ENSRNOG00000008607
N
0.000
U2SURP
Sus scrofa
ENSSSCG00000011684
N
0.000
U2SURP
Tupaia belangeri
ENSTBEG00000016313
N
0.000
U2SURP
Taeniopygia guttata
ENSTGUG00000008687
N
0.000
U2SURP
Tetraodon nigroviridis
ENSTNIG00000012767
N
0.000
U2SURP
Takifugu rubripes
ENSTRUG00000017810
N
0.000
U2SURP
Tursiops truncatus
ENSTTRG00000017170
N
0.000
U2SURP
Vicugna pacos
ENSVPAG00000004697
N
0.000
estExt_fgenesh2_pm.C_3790010
Branchiostoma floridae
estExt_fgenesh2_pm.C_3790010
N
0.000
e_gw1.11.101.1
Capitella teleta
e_gw1.11.101.1
N
0.000
CG9346
Drosophila melanogaster
FBgn0034572
N
0.000
GA21718-RA
Drosophila pseudoobscura
FBgn0081703
N
0.000
GG22076
Drosophila erecta
FBgn0114251
N
0.000
GH20523
Drosophila grimshawi
FBgn0127986
N
0.000
GI21069
Drosophila mojavensis
FBgn0143801
N
0.000
GL10142
Drosophila persimilis
FBgn0147752
N
0.000
GM15794
Drosophila sechellia
FBgn0170710
N
0.000
GD11555
Drosophila simulans
FBgn0183296
N
0.000
GJ21992
Drosophila virilis
FBgn0209106
N
0.000
GE12157
Drosophila yakuba
FBgn0229923
N
0.000
nasonia_NCBI_hmm274824
Nasonia vitripennis
nasonia_NCBI_hmm274824
N
0.000
PHUM176690
Pediculus humanus
PHUM176690
N
0.000
Sjc_0023880
Schistosoma japonicum
Sjc_0023880
N
0.000
Smp_161730
Schistosoma mansoni
Smp_161730
N
0.000
XP_001179024.1
Strongylocentrotus purpuratus
XP_001179024.1
N
0.000
XP_794306.2
Strongylocentrotus purpuratus
XP_794306.2
N
0.000